A molecular mechanics study of the effect of substitution in position 1 on the conformational space of the oxytocin/vasopressin ring

Summary The effect of the substitution in position 1 on the low-energy conformations of the oxytocin/vasopressin 20-membered ring was investigated by means of molecular mechanics. Three representative substitutions were considered: -mercapto-,-dimethyl)propionic acid (Dmp), (-mercapto-,-cyclopentamethylene)propionic acid (Cpp), both forming strong antagonists, and (,-dimethyl--mercapto)propionic acid (-Dmp), forming analogs of strongly reduced biological activity, with the -mercaptopropionic (Mpa) residue taken as reference. Both ECEPP/2 (rigid valence geometry) and AMBER (flexible valence geometry) force fields were employed in the calculations. Three basic types of backbone conformations were taken into account which are distinguished by the type of -turn at residues 3 and 4: 1/III, II, and I/III, all types containing one or two intra-annular hydrogen bonds. The allowed (ring-closed) disulfide-bridge conformations were searched by an algorithm formulated in terms of scanning the disulfide-bridge torsional angle C-S-S-C. The ECEPP/2 and AMBER energies of the obtained conformations were found to be in reasonable agreement. Two of the low-energy conformers of the [Mpa¹]-compound agreed very well with the cyclic part of the two conformers found in the crystal structure of [Mpa¹]-oxytocin. An analysis of the effect of -substitution on relative energies showed that the conformations with the N-C-CH₂-CH₂ (₁) and C-CH₂-CH₂-S (₁) angles of the first residue around (–100°, 60°) and (100°, –60°) are not affected; this in most cases implies a left-handed disulfide bridge. In the case of -substitution the allowed values of ₁ are close to ± 60°. This requirement, being in contradiction to the one concerning -substitution, could explain the very low biological activity of the -substituted analogs. The conformational preferences of substituted compounds can largely be explained by the analysis of local interactions within the first residue. Based on the selection of the conformations which are low in energy for both the reference and -substituted compounds, two distinct types of possible binding conformations were proposed, the first one being similar to the crystal conformer with a left-handed disulfide bridge, the second one having a right-handed bridge, but a geometry different from that of the crystal conformer with the right-handed bridge. The first type of disulfide-bridge arrangement is equally favorable for both I/III and II types of backbone structure, while the second one is allowed only for the II type of backbone. No conformation of the I/III type has a low enough energy to be considered as a possible binding conformation for all of the active compounds studied in this work.     

Gas-Phase Fragmentation of Oligoproline Peptide Ions Lacking Easily Mobilizable Protons

The fragmentation of peptides containing quaternary ammonium group, but lacking easily mobilizable protons, was examined with the aid of deuterium-labeled analogs and quantum-chemical modeling. The fragmentation of oligoproline containing quaternary ammonium group involves the mobilization of hydrogens localized at α- and γ- or δ-carbon atoms in the pyrrolidine ring of proline. The study of the dissociation pattern highlights the unusual proline residue behavior during MS/MS experiments of peptides.      

Densitometric Determination of Embelin in Lysimachia punctata

JPC – Journal of Planar Chromatography – Modern TLC - Athin layer chromatographic method with densitometric UV detection at λ = 285 nm has been developed for quantification of...     

Addition of dipropylamine to multiacrylate and its model compound catalyzed by lithium dipropylamide

The nucleophilic addition reaction of dipropylamine to vinyl groups of multiacrylate - poly(2-acryloyloxyethyl methacrylate) and to 2-butyrylethyl acrylate as model compound has been investigated. Based on the results obtained, it has been shown that the addition reaction rate of dipropylamine to multiacrylate and 2-butyrylethyl acrylate is proportional to [CH₂=CH-] and to [(C₃H₇)₂NLi] with the ratio [(C₃H₇)₂NH]_o/[(C₃H₇)₂NLi]_o = 20. Second-order addition reaction rate constants and activation energies for the systems under investigation have been determined. This revised version was published online in August 2006 with corrections to the Cover Date.     

Investigation of the tensile properties of “epoxy resin‐monomer” systems using cationic UV‐crosslinkable blends

The compatibility of cycloaliphatic and aromatic multifunctional epoxides with several epoxide resins allows the development of a wide range of cationic radiation‐curable formulations. The influence of different “epoxide resin‐monomer” systems UV‐cured in the presence of suitable cationic photoinitiators on the resulting physicochemical film properties was studied, and the results are stated. Copyright © 2004 John Wiley & Sons, Ltd.     

Structure of colloid silica determined by viscosity measurements

The viscosity of nanosized colloid silica suspensions, used as binders in the investment casting, was determined as a function of their weight fraction reaching 52%. A new capillary viscometer was used whose construction eliminated sedimentation effects. The experiments have been carried out at fixed pH 10.0 and controlled ionic strength. It was found that for a low silica concentration range (weight fraction below 5%) the suspension viscosity increased more rapidly than the Einstein theory predicts. This anomalous behavior could not be explained in terms of the primary electroviscous effect predicted to be a few orders of magnitude smaller as observed. This discrepancy was accounted for by postulating a fuzzy, gel-like structure of colloid silicas used in our experiments. Hence, the apparent hydrodynamic radius of silica particles in aqueous suspensions was found to be larger than the primary particle size in accordance with previous observations. Based on this postulate, an apparent density of the silica sols was found to be 1.32-1.37 g/cm(3) instead of 2.2-2.32 g/cm(3) as determined from the suspension dilution method. This behavior was interpreted in terms of the core/shell model with high shell porosity, reaching 85%. Similarly, for higher concentration ranges, silica viscosity increased more rapidly with increased sol concentration than predicted by the Batchelor model derived for hard particles. The deviation was attributed to the secondary electroviscous effect stemming from the electrostatic interactions among silica particles in sheared suspensions. This effect has quantitatively been interpreted in terms of Russel's theory. On the other hand, for the high concentration range the experimental results were well accounted for by the Dougherty-Krieger model. By exploiting our experimental findings a sensitive method of determining the structure and apparent density of silica sols in aqueous media was proposed.     

Decomposition of γ-Cyclotrimethylene Trinitramine (γ-RDX): Relevance for Shock Wave Initiation

To elucidate the reactive behavior of RDX crystals at pressures and temperatures relevant to shock wave initiation, Raman spectroscopy and optical imaging were used to determine the pressure-temperature (P-T) stability and the decomposition of γ-RDX, the high pressure phase of RDX. Experiments were performed on single crystals in a diamond anvil cell at pressures from 6 to 12 GPa and at temperatures up to 600 K. Evidence for the direct decomposition of γ-RDX above 6 GPa, without the involvement of other phases, is provided. The upper limit of the P-T locus for the γ-RDX thermal decomposition was determined. A refined P-T phase diagram of RDX is presented that includes the current findings for γ-RDX. The static compression results are used to gain key insight into the shock initiation of RDX, including a determination of the RDX phase at decomposition and understanding the role of pressure and temperature in accelerating shock induced decomposition. This study has established the important role that γ-RDX plays in decomposition of RDX under static and shock compression conditions; thus theoretical modeling of RDX decomposition at high pressures and temperatures needs to incorporate the γ-phase response.     

Hematite nanoparticle monolayers on mica preparation by controlled self-assembly

In this research, a simple, green and effective strategy was developed to produce long-term stable oil in water emulsion from soy protein and soy polysaccharide. Soy protein and soy polysaccharide formed dispersible complexes at pH around 3.25 aqueous solution through electrostatic and hydrophobic interactions. A high pressure homogenization produced the protein/polysaccharide complex emulsion having a droplet size about 250 nm. A heat treatment of the emulsion resulted in the protein denaturation, forming irreversible oil-water interfacial films composed of soy protein/soy polysaccharide complexes. The droplets of the emulsion were characterized by dynamic light scattering, ζ-potential, transmission electron microscopy, polysaccharide digestion via pectinase, and confocal laser scanning microscopy observation via dual fluorescence probes. As a result of the polysaccharide being fixed on the droplet surface, the emulsions exhibited long-term stability in the media containing pH values of 2-8 and 0.2 mol/L NaCl. The stable soy protein/soy polysaccharide complex emulsion is a suitable food-grade delivery system in which lipophilic bioactive compounds can be encapsulated.     

Oxozinc carboxylates: a predesigned platform for modelling prototypical Zn-MOFs' reactivity toward water and donor solvents

Two unique adducts of an oxozinc carboxylate cluster with H(2)O and THF were isolated and structurally characterized, [Zn(4)(μ(4)-O)(O(2)CR)(6)(H(2)O)(THF)]·2(THF) and [Zn(4)(μ(4)-O)(O(2)CR')(6)(THF)(3)] (where R = benzoate and R' = 9-antracenecarboxylate anion). The study shows that the zinc centers of the Zn(4)O core can easily form unique coordination environments without breaking of the Zn-O(carboxylate) bonds.