Active learning with support vector machine applied to gene expression data for cancer classification

There is growing interest in the application of machine learning techniques in bioinformatics. The supervised machine learning approach has been widely applied to bioinformatics and gained a lot of success in this research area. With this learning approach researchers first develop a large training set, which is a time-consuming and costly process. Moreover, the proportion of the positive examples and negative examples in the training set may not represent the real-world data distribution, which causes concept drift. Active learning avoids these problems. Unlike most conventional learning methods where the training set used to derive the model remains static, the classifier can actively choose the training data and the size of training set increases. We introduced an algorithm for performing active learning with support vector machine and applied the algorithm to gene expression profiles of colon cancer, lung cancer, and prostate cancer samples. We compared the classification performance of active learning with that of passive learning. The results showed that employing the active learning method can achieve high accuracy and significantly reduce the need for labeled training instances. For lung cancer classification, to achieve 96% of the total positives, only 31 labeled examples were needed in active learning whereas in passive learning 174 labeled examples were required. That meant over 82% reduction was realized by active learning. In active learning the areas under the receiver operating characteristic (ROC) curves were over 0.81, while in passive learning the areas under the ROC curves were below 0.50.     

CCl2自由基与H2O分子反应动力学研究

用213 nm激光光解CCl4产生CCl2自由基，用LP LIF技术测定了室温下基态CCl2自由基与H2O分子的反应速率常数为(5.45±0.95)×10－14 cm3•molecule－1•s－1.在G2MP2理论水平上计算了CCl2＋H2O反应的最低单重态势能面，揭示了插入与加成 消除两种反应机理，得到了三个可能的产物通道:HCl＋HClCO、HCl＋trans ClCOH以及HCl＋cis ClCOH.并用RRKM TST和传统过渡态理论计算了这三个通道的分支比及其温度效应.结果说明在低温下（273 K），插入机理的产物通道的分支比远大于加成 消除机理的产物通道， HCl＋HClCO是主要产物，分支比为77.4％，其次是HCl＋cis ClCOH，分支比为22.6％.而在高温下（3000 K），加成 消除机理的反应通道大于插入机理， HCl＋trans ClCOH分支比为82.3％.     

CURING KINETICS AND PROPERTIES OF ACRYLIC RESIN CURED WITH AZIRIDINE CROSSLINKER

A kind of aziridine crosslinkers was synthesized and used to crosslink acrylate copolymers. The crosslinkingproperties and curing kinetics of the resin were studied. It was found that with the increase of the content of crosslinker in theemulsion, the mechanical properties and solvent resistance of the resin will be apparently improved, but its glass transitiontemperature (T_g) is very low. The lowest amount of crosslinker used in the acrylic resin emulsion is 0.25%. Curing kineticsstudied by DSC show that this curing reaction occurs readily because the apparent activation energy of the reaction is low(65.1 kJ/mol). These results demonstrate that the aziridine crosslinker is indeed a low temperature crosslinking agent and canbe used at room temperature.     

Synthesis of fused polycyclic aromatics by palladium-catalyzed annulation of arynes using 2-halobiaryls

The Pd-catalyzed annulation of arynes by 2-halobiaryls and related vinylic halides provides a very efficient, high yielding synthesis of polycyclic aromatic and heteroaromatic hydrocarbons. This process appears to involve the catalytic, stepwise coupling of two very reactive substrates, an aryne and an organopalladium species, to generate excellent yields of cross-coupled products.     

Total synthesis of crotophorbolone

As a natural diterpenoid, crotophorbolone possesses a challenging trans,trans-5/7/6 framework decorated with six contiguous stereogenic centers and is structurally and biogenetically related to tigliane-type diterpenoids with intriguing bioactivities such as phorbol and prostratin. Based on the convergent strategy, we completed an eighteen-step total synthesis of crotophorbolone starting from (−)-carvone and (+)-dimethyl-2,3-O-isopropylidene-l-tartrate. The key elements of the synthesis involve expedient installation of the six-membered ring and the five-membered ring with multiple functional groups at an early stage, cyclization of the seven-membered ring through alkenylation of the ketone between the five-membered ring and the six-membered ring, functional group-sensitive ring-closing metathesis and final selective introduction of hydroxyls at C₂₀ and C₄.

Convergent total synthesis of crotophorbolone was accomplished in 18 longest linear steps. Observation of unexpected thermodynamic stability of a cis,trans-5/7/6 tricycle would benefit synthetic design of tigliane- and daphnane-related diterpenoids.     

Formation of adenine-N3/guanine-N7 cross-link in the reaction of trans-oriented platinum substrates with dinucleotides

The reactions of the anticancer complex trans-[PtCl2{(E)-HN=C(OMe)Me}2] (trans-EE) with a series of ribo and deoxyribodinucleotides have been studied by HPLC and 2D [1H, 15N] HMQC NMR spectroscopy and compared with those of the inactive trans isomer of cisplatin, trans-[PtCl2(NH3)2] (trans-DDP). Reactions of trans-EE with r(ApG) and d(ApG) take place through solvolysis of the starting substrate and subsequent formation of trans G-N7/monochloro and G-N7/monoaqua adducts. Slowly, the monofunctional adducts evolve to a bifunctional adduct forming an unprecedented and unexpected A-N3/G-N7 platinum cross-link spanning two trans positions. For stereochemical reasons, trans platinum complexes cannot form N7/N7 cross-links between adjacent purines in di- or polynucleotides. For the reverse sequence r(GpA), no chelate structure was formed even after a two-week reaction. The reaction of trans-DDP with r(ApG) produces many more products than the analogous reaction with trans-EE. One of these products was identified as the A-N3/G-N7 trans-chelate.     

A new method for the quantitation of aflatoxin M1 in urine by high performance liquid chromatography and its application to the etiologic study of hepatoma

A high performance liquid chromatographic (HPLC) method for the analysis of aflatoxin M1 (AFM1) in urine is described. Urine samples were treated with saturated lead acetate and AFM1 was extracted with chloroform. After washing with water to remove impurities the compound was derivatized with trifluoroacetic acid and the AFM1 derivative was analyzed quantitatively by HPLC. The sample pretreatment is simple and more selective. A good line correlation between AFM1 peak height and its concentration was obtained when AFM1 content was in the range of 50-400 pg. The ratio of recovery was 87.42%. Sensitivity is 0.01 ppb. The method is applicable to trace analysis. Results in urine of residents who live in the high/low liver cancer incidence area in Fushui county were the same as that of previous epidemiological investigation.     

南药巴戟天中十二种无机元素与药效关系的进一步研究

在初步研究的基础上，进一步研究了不同产地巴戟天的无机元素含量差异，通过对比各元素含量、相关系数及TE图谱，说明地道药材与非地道药材的巴戟天，其特征元素的含量存在非常明显的差异，要使大面积扩种的药材提高药效，建议根据当地土壤含Mn、Fe、Cr、Co、Ni的含量，以旋微量元素肥料的方法来补充这些元素在土壤中的不足。但在微量元素肥料配方中，应注意巴戟天吸收土壤中的元素时的协同作用和拮抗作用。     

激光等离子体反应生成的AgP+n、AumP+n的结构分析

原子簇化合物的合成方法,由于条件限制,只有B、C、St等非金属元素与过渡金属袈基化合物等较为成熟．贵金属原子簇的合成则较困难．然而,应用激光等离子体反应,可使周期表内几乎所有元素都生成原子簇,为原子簇的生成与研究提供了一条新途径．该方法生成的原子簇在飞行时间质谱仪上可记录到一系列信号,某些信号呈现区域极大（或被称为‘匈数’吵］．郑兰芬等用纯化的红磷粉分别与金粉、银粉混合,在激光等离子作源飞行时间质谱仪上得到一系列谱图【2］：ig与P作用只得到单核xg与P形成的lgy：iE离子簇．谱图较简单,＊沪X最大可达叱叱…     

蔗糖酯示波极谱分析法的研究

蔗糖酯分子在碱性条件下，加热水解为蔗糖和硬酯酸，在ｐＨ＞１０的ＮＨ＿３·Ｎ＿２Ｏ－（ＮＨ＿３）＿３Ｃ＿６Ｈ＿５Ｏ＿７体系中，于示波极谱仪上，峰电位─０．９１Ｖ处出现一灵敏度高和稳定性好的极谱图，其浓度从０．０２～０．２８ｍｇ／ｍＬ与峰电流呈线性关系，最低检出限为０．００４ｍｇ／ｍＬ，相对标准偏差为１．３％。