Insights into the Pamamycin Biosynthesis

Pamamycins are macrodiolides of polyketide origin with antibacterial activities. Their biosynthesis has been proposed to utilize succinate as a building block. However, the mechanism of succinate incorporation into a polyketide was unclear. Here, we report identification of a pamamycin biosynthesis gene cluster by aligning genomes of two pamamycin‐producing strains. This unique cluster contains polyketide synthase (PKS) genes encoding seven discrete ketosynthase (KS) enzymes and one acyl‐carrier protein (ACP)‐encoding gene. A cosmid containing the entire set of genes required for pamamycin biosynthesis was successfully expressed in a heterologous host. Genetic and biochemical studies allowed complete delineation of pamamycin biosynthesis. The pathway proceeds through 3‐oxoadipyl‐CoA, a key intermediate in the primary metabolism of the degradation of aromatic compounds. 3‐Oxoadipyl‐CoA could be used as an extender unit in polyketide assembly to facilitate the incorporation of succinate.     

Microwave-resonance-induced resistivity: evidence of ultrahot surface-state electrons on liquid 3He

Measurements of the dc resistivity of surface-state electrons on liquid helium exposed to microwave radiation are reported. It is shown that the resonant microwave excitation of surface-state electrons is accompanied by a strong increase in their resistivity, which is opposite to the result expected from the previously used two-level model. We show that even a very small fraction of electrons excited to the first excited state and decaying back due to vapor-atom scattering strongly heat the electron system, causing a population of higher subbands. The calculated resistivity change is in good agreement with the observed data.     

Amine-Reactive BODIPY Dye: Spectral Properties and Application for Protein Labeling

A boron-dipyrromethene (BODIPY) derivative reactive towards amino groups of proteins (NHS-Ph-BODIPY) was synthesized. Spectroscopic and photophysical properties of amine-reactive NHS-Ph-BODIPY and its non-reactive precursor (COOH-Ph-BODIPY) in a number of organic solvents were investigated. Both fluorescent dyes were characterized by green absorption (521–532 nm) and fluorescence (538–552 nm) and medium molar absorption coefficients (46,500–118,500 M⁻¹·cm⁻¹) and fluorescence quantum yields (0.32 – 0.73). Solvent polarizability and dipolarity were found to play a crucial role in solvent effects on COOH-Ph-BODIPY and NHS-Ph-BODIPY absorption and emission bands maxima. Quantum-chemical calculations were used to show why solvent polarizability and dipolarity are important as well as to understand how the nature of the substituent affects spectroscopic properties of the fluorescent dyes. NHS-Ph-BODIPY was used for fluorescent labeling of a number of proteins. Conjugation of NHS-Ph-BODIPY with bovine serum albumin (BSA) resulted in bathochromic shifts of absorption and emission bands and noticeable fluorescence quenching (about 1.5 times). It was demonstrated that the sensitivity of BSA detection with NHS-Ph-BODIPY was up to eight times higher than with Coomassie brilliant blue while the sensitivity of PII-like protein PotN (PotN) detection with NHS-Ph-BODIPY and Coomassie brilliant blue was almost the same. On the basis of the molecular docking results, the most probable binding sites of NHS-Ph-BODIPY in BSA and PotN and the corresponding binding free energies were estimated.     

Self-Diffusion Coefficients for Pure and Mixed Adsorbate Fluids in Narrow Pores

The equilibrium distribution and the concentration dependence of the local and average self-diffusion coefficients for pure fluid and binary mixture components in narrow slitlike pores were analyzed. The coefficients were calculated using the lattice gas model in the quasi-chemical approximation on the assumption of a spherical shape and approximately equal sizes of the components. For the pure adsorbate, these calculations were compared with molecular dynamics simulations. Both methods gave similar concentration profile changes and dynamic characteristics of interlayer particle redistributions in strong nonuniform adsorption fields for dense fluids. A satisfactory agreement was obtained for the temperature dependences of the self-diffusion coefficients along the pore axis. The influence of the molecule–wall potential and of intermolecular interaction were considered. The self-diffusion coefficients of the adsorbate were shown to strongly depend on the density of the mixture and the distance from pore walls.     

The Neumann boundary problem for axisymmetric fractional heat conduction equation in a solid with?cylindrical hole and associated thermal stress

The theory of thermoelasticity based on the heat conduction equation with the Caputo time-fractional derivative of order α is used to study thermal stress in an infinite medium with a cylindrical hole. Two types of Neumann boundary conditions are considered: the constant value of the normal derivative of the temperature and constant heat flux at the surface of a cavity. The solution is obtained applying Laplace and Weber integral transforms. Numerical results are illustrated graphically.     

Role of vacancies of a strongly strained crystal in the melting process

It has been shown that, apart from classical vacancies formed as a result of the thermal fluctuations, a crystal can contain so-called nonclassical vacancies of nonfluctuation nature. The latter vacancies appear when the temperature exceeds a critical value T _C . The factor responsible for their formation is a mechanical instability of an ideal crystal. The temperature T _C is a second-order phase transition point. The vacancies formed as a result of this phase transition are joined together into small clusters with sizes of the order of several atoms. The above transition makes a substantial contribution to the premelting process observed experimentally.     

Intermediate carbene formation in the reaction of thioamides with phosphorus (III) derivatives: Quantum chemical investigation

The reactions of perfluoroalkyl thioamides with trimethyl phosphine, trimethyl phosphite, and tris(dimethylamino)phosphine have been analyzed by means of quantum chemical (DFT and MP2) calculations. The reaction seems to proceed via the nucleophilic attack of the electrophilic carbon atom by the phosphorus lone pair with the formation of cyclic or acyclic adducts. The latter releases the thiophosphate molecule forming perfluoroalkylaminocarbene as the short‐lived intermediate. The reaction of the carbene with the second molecule of trialkyl phosphite yields phosphorus ylide. The ylide undergoes a migration of fluorine from carbon to phosphorus. The reactions of perfluoroalkyl thioamides with phosphines and tris(dimethylamino)phosphine probably proceeds differently. Using alkyl thioamides or amides instead of perfluoroalkyl thioamides also makes the reaction less favorable. The only combination of perfluoroalkyl thioamides with trialkyl phosphite fulfills both the kinetic requirements (moderate activation energies and relative energies for intermediates) and the thermodynamic aspects (higher stabilities of the reaction products compared with the starting materials). © 2013 Wiley Periodicals, Inc.