Manipulation of Förster energy transfer of coupled fluorophores through biotransformation by Pseudomonas resinovorans CA10

An alkyne‐terminated anthracene and azide‐terminated carbazole were joined through a copper‐catalyzed cycloaddition to form a joined donor/acceptor pair. The photonic pair exhibited energy transfer when excited at the peak absorbance of carbazole and fluoresced with an anthracene spectral response. The fluorescent behavior was confirmed as Förster energy transfer (FRET). The lysate of Pseudomonas resinovorans CA10, a member of a predominant group of soil microorganisms that can metabolize a host of substrates, was employed to degrade the pair and alter the luminance spectral characteristics. The FRET was diminished and the corresponding, individual fluorescence of carbazole and anthracene returned. This general approach may find applications in single‐cell metabolic studies and bioactivity assays.     

Highly-controlled grafting of mono and dicationic 4,4'-bipyridine derivatives on SBA-15 for potential application as adsorbent of CuCl(2) from ethanol solution

Ultra-large-pore FDU-12 (ULP-FDU-12) silica with face-centered cubic structure (Fm3m type) of spherical mesopores was synthesized using Pluronic F127 triblock copolymer (EO(106)PO(70)EO(106)) and ethylbenzene as a new micelle expander at initial temperature of 14 °C. Ethylbenzene was identified on the basis of its reported extent of solubilization in poly(ethylene oxide)-poly(propylene oxide)-type surfactant micelles, which was similar to that of xylene, the latter having been shown earlier to afford ULP-FDU-12. The unit-cell parameter of as-synthesized ULP-FDU-12 was 55 nm, which is similar to the highest value reported when xylenes (mixture of isomers) were used and larger than that achieved with trimethylbenzene. The unit-cell parameter of calcined ULP-FDU-12 reached 52 nm. For the obtained materials, the nominal pore cage diameter calculated from nitrogen adsorption reached 32 nm, whereas the actual pore cage diameter calculated using the geometrical relation was 36 nm. The pore entrance size was below 5 nm before the acid treatment, but was greatly enlarged as a result of the treatment. The sample prepared without hydrothermal treatment was converted to ordered closed-pore silica at as low as 400-450 °C. Our study confirms the ability to select micelle expanders on the basis of data on solubilization of compounds in micelle solutions.     

Expedient one-pot organometallics-free synthesis of tris(2-pyridyl)phosphine from 2-bromopyridine and elemental phosphorus

2-Bromopyridine reacts with elemental phosphorus (red or white) in a superbasic KOH/DMSO(H₂O) suspension at 100 °C (for red phosphorus) and 75 °C (for white phosphorus) over 3 h to afford tris(2-pyridyl)phosphine in a 62% yield (from red phosphorus) and a 50% yield (from white phosphorus). Under microwave assistance, the reaction with red phosphorus takes just 20 min to produce tris(2-pyridyl)phosphine in 53% yield. A hitherto unknown complex, [Pd(PPy₃)₂Cl₂]·CH₂Cl₂, synthesized from tris(2-pyridyl)phosphine and PdCl₂, has the cis-configuration; this is unusual for bis(phosphino)palladium dichloride complexes.     

Urease adsorption and activity on magnetite nanoparticles functionalized with monofunctional and bifunctional surface layers

The surface of magnetite nanoparticles was coated with functional polysiloxane layers using reaction of hydrolytic copolycondensation of tetraethoxysilane and 3-aminopropyltriethoxysilane (or N-[3-trimethoxysilylpropyl]ethylendiamine), and also that of tetraethoxysilane, 3-aminopropyltriethoxysilane and methyltriethoxysilane (or n-propyltriethoxysilane). It was shown that these functionalized magnetically controllable particles (about 60–150 nm in size as aggregates), as opposed to magnetite, adsorb urease well from aqueous solutions (up to 1 g/g), and that the level of residual activity of adsorbed layers is up to 84 % in the case of a bifunctional sample. It was established that the activity of immobilized urease is normally gradually reduced during storage of the samples, but in the case of ethylenediamine functional group is not decreased for 45 days. The synthesized samples are promising for use as magnetically directed biocatalysts.     

Hierarchical Order Parameters for Macromolecular Assembly Simulations I: Construction and Dynamical Properties of Order Parameters

Macromolecular assemblies often display a hierarchical organization of macromolecules or their sub-assemblies. To model this, we have formulated a space warping method that enables capturing overall macromolecular structure and dynamics via a set of coarse-grained order parameters (OPs). This article is the first of two describing the construction and computational implementation of an additional class of OPs that has built into them the hierarchical architecture of macromolecular assemblies. To accomplish this, first, the system is divided into subsystems, each of which is described via a representative set of OPs. Then, a global set of variables is constructed from these subsystem-centered OPs to capture overall system organization. Dynamical properties of the resulting OPs are compared to those of our previous nonhierarchical ones, and implied conceptual and computational advantages are discussed for a 100ns, 2 million atom solvated Human Papillomavirus-like particle simulation. In the second article, the hierarchical OPs are shown to enable a multiscale analysis that starts with the N-atom Liouville equation and yields rigorous Langevin equations of stochastic OP dynamics. The latter is demonstrated via a force-field based simulation algorithm that probes key structural transition pathways, simultaneously accounting for all-atom details and overall structure.     

The Neumann boundary problem for axisymmetric fractional heat conduction equation in a solid with?cylindrical hole and associated thermal stress

The theory of thermoelasticity based on the heat conduction equation with the Caputo time-fractional derivative of order α is used to study thermal stress in an infinite medium with a cylindrical hole. Two types of Neumann boundary conditions are considered: the constant value of the normal derivative of the temperature and constant heat flux at the surface of a cavity. The solution is obtained applying Laplace and Weber integral transforms. Numerical results are illustrated graphically.     

Koszul duality for extension algebras of standard modules

We define and investigate a class of Koszul quasi-hereditary algebras for which there is a natural equivalence between the bounded derived category of graded modules and the bounded derived category of graded modules over (a proper version of) the extension algebra of standard modules. Examples of such algebras include, in particular, the multiplicity free blocks of the BGG category O, and some quasi-hereditary algebras with Cartan decomposition in the sense of König.     

Time-dependent electrical properties of liquid crystal cells: unravelling the origin of ion generation

An understanding of possible sources of ion generation in liquid crystal materials is of utmost importance to ensure uncompromised performance of modern liquid crystal devices. In this paper, time-dependent electrical properties of filled liquid crystal cells are used to reveal important information about often overlooked source of ion generation in liquid crystals. This source of ions originates from the ionic contamination of substrates of the liquid crystal cell. Ionic contaminants can be inherently present in the alignment layers or can be induced by external factors such as mechanical rubbing or irradiation with light. The model of this ion generation process is presented and tested using existing experimental data.