No-wash protein labeling with designed fluorogenic probes and application to real-time pulse-chase analysis

Small molecule labeling techniques for cellular proteins under physiological conditions are very promising for revealing new biological functions. We developed a no-wash fluorogenic labeling system by exploiting fluorescence resonance energy transfer (FRET)-based fluorescein-cephalosporin-azopyridinium probes and a mutant β-lactamase tag. Fast quencher elimination, hydrophilicity, and high resistance against autodegradation were achieved by rational refinement of the structure. By applying the probe to real-time pulse-chase analysis, the trafficking of epidermal growth factor receptors between cell surface and intracellular region was imaged. In addition, membrane-permeable derivatization of the probe enabled no-wash fluorogenic labeling of intracellular proteins.     

The reaction of 4-aminocoumarin with β-carbonyl-substituted 4Н-chromenes: synthesis of 5H-chromeno[4,3-b]pyridin-5-one derivatives

Chemistry of Heterocyclic Compounds - Reactions of 4Н-chromene-3-carbaldehydes and 1Н-benzo[f]chromene-3-carbaldehydes with 4-aminocoumarin were used to obtain a series of...     

Transition state localization by a density functional method. Applications to isomerization and symmetry-forbidden reactions

Summary A new transition state algorithm incorporated into the density functional code deMon, has been used to study thetrans cis-hydroxymethylene andtrans-hydroxymethylene formaldehyde isomerization processes and to localize the transition state for the decomposition of 1,3-diazacyclobutane to methyleneimine. Calculations have been performed using both local (LSD) and nonlocal spin density (NLSD) gradient-corrected approximations. Two different basis sets of small and large size have been used for the study in order to analyze the effect of the basis set dimension other than that of the nonlocal corrections on the activation energy barrier value. The results seem to confirm that density functional methods can be considered practical and reliable tools for the localization of transition states.     

Raising the conductivity of crystalline polymer electrolytes by aliovalent doping

Polymer electrolytes, salts dissolved in solid polymers, hold the key to realizing all solid-state devices such as rechargeable lithium batteries, electrochromic displays, or SMART windows. For 25 years conductivity was believed to be confined to amorphous polymer electrolytes, all crystalline polymer electrolytes were thought to be insulators. However, recent results have demonstrated conductivity in crystalline polymer electrolytes, although the levels at room temperature are too low for application. Here we show, for the first time, that it is possible to raise significantly the level of ionic conductivity by aliovalent doping. The conductivity may be raised by 1.5 orders of magnitude if the SbF6- ion in the crystalline conductor poly(ethylene oxide)6:LiSbF6 is replaced by less than 5 mol % SiF6(2-), thus introducing additional, mobile, Li+ ions into the structure to maintain electroneutrality.     

Relaxation dynamics in glycerol-water mixtures: I. Glycerol-rich mixtures

We discuss the relaxation dynamics of glycerol-water mixtures, as studied by dielectric spectroscopy in the frequency range from 1 Hz to 250 MHz and at temperatures between 173 and 323 K. The experimental results obtained for the glycerol-rich mixtures suggest that the main dielectric relaxation process, as well as the so-called high-frequency "excess wing" (EW) and dc conductivity, follow the same temperature dependence. This result indicates that all of these processes are induced by the same molecular origin. A new phenomenological function is proposed to describe the whole dielectric spectrum in the covered frequency range, and some possible mechanisms of dielectric behaviors through the dc conductivity, the main relaxation process, and the EW are discussed.     

An electrodynamics-based model for ion diffusion in microbial polysaccharides

An electrodynamics-based model was formulated for simulation of ion diffusion in microbial polysaccharides. The fixed charges and electrostatic double layers that may associate with microbial polysaccharides and their effects on ion diffusion were explicitly built into the model. The model extends a common multicomponent ion diffusion formulation that is based on irreversible thermodynamics under a zero ionic charge flux condition, which is only applicable to the regions without fixed charges and electrostatic double layers. An efficient numerical procedure was presented to solve the differential equations in the model. The model well described key features of experimental observations of ion diffusion in negatively charged microbial polysaccharides including accelerated diffusive transport of cations, exclusion of anions, and increased rate of cation transport with increasing negative charge density. The simulated diffusive fluxes of cations and anions were consistent with a cation exchange diffusion concept in negatively charged polysaccharides at the interface of plant roots and soils; and the developed model allows to mathematically study such diffusion phenomena. An illustrative example was also provided to simulate dynamic behavior of ionic current during ion diffusion within a charged bacterial cell wall polysaccharide and the effects of the ionic current on the compression or expansion of the bacterial electrostatic double layer at the interface of the cell wall and bulk solution.     

Interaction between Ti-gel and silver, copper, as well as nickel compounds under ultrasound irradiation

Ag-TiO₂, Cu-TiO₂ and Ni-TiO₂ were prepared by sonication. The interactions of Ti-gel with silver, copper and nickel ions under ultrasound irradiation are very different, although these ions can be dispersed very well in titania. The results of EDXA and XRD analysis indicate that Ti-gel does not react with AgCl and crystallizes unaffectedly to form rutile. M(OH)₂ (M = Cu and Ni), on the other hand, favors polycondensation with Ti-gel and affects the crystallization of Ti-gel. CuO favors stabilization of the anatase phase. Ni²⁺ ions tend to incorporate more easily into titania than Cu²⁺ ions do when the samples are calcined. TEM, and BET were also used to characterize the samples.     

New Rare‐Earth Metal Germanides RE2Ge9 (RE = Nd,Sm) by Thermal Decomposition of High‐Pressure Phases REGe5

The rare‐earth metal germanides RE₂Ge₉ (RE = Nd, Sm) have been prepared by thermal decomposition of the metastable high‐pressure phases REGe₅ at ambient pressure. The compounds adopt an orthorhombic unit cell with a = 396.34(4) pm; b = 954.05(8) pm and c = 1238.4(1) pm for Nd₂Ge₉ and a = 395.46(7) pm; b = 946.4(2) pm and c = 1232.1(3) pm for Sm₂Ge₉. Crystal structure refinements reveal space group Pmmn (No. 59) for Nd₂Ge₉. The atomic pattern resembles an ordered defect variety of the pentagermanide motif REGe₅ (RE = La; Nd, Sm, Gd, Tb) comprising corrugated germanium layers. These condense into a three‐dimensional network interconnected by eight‐coordinated germanium atoms. The resulting framework channels along [100] enclose the neodymium atoms. With respect to the atomic arrangement of the pentagermanides, half of the interlayer germanium atoms are eliminated in an ordered way so that occupied and empty germanium columns alternate along [001]. The rare‐earth metal atoms of both types of compounds, REGe₅ and RE₂Ge₉, exhibit the electronic states 4f ³ and 4f ⁵ (oxidation state +3) for neodymium and samarium, respectively, evidencing that the modification of the germanium network leaves the electron configuration of the metal atoms unaffected.