Highly oxygenated triterpenes from the roots of Atropa acuminata

Two new oleanane triterpenes; 2alpha,3alpha,24-trihydroxyolean-12-ene-28,30-dioic acid ([structure: see text]) and 2alpha,3alpha,24,28-tetrahydroxyolean-12-ene ([structure: see text]) have been isolated from the roots of Atropa acuminata. Anti-oxidant p-hydroxyphenethyl trans-ferulate ([structure: see text]), beta-sitosterol-3-O-beta-D-glucopyranoside ([structure: see text]) and oleanolic acid ([structure: see text]) have also been reported for the first time from this species. The structures were determined by spectroscopic studies including 2D-NMR.     

Ruthenium(II) complexes with mono and ditertiary arsines and phosphines and their reaction with small molecules

Dichlorotetrakis(dimethylsulphoxide)ruthenium(II) reacts with AsPh₃ AsMePh₂, AsMe₂Ph and SbPh₃ in ethanolic hydrochloric acid solution to yield the complexes RuCl₂(DMSO)₂(AsPh₃)₂, RuCl₂(DMSO) L₂ (L = AsMePh₂, AsMe₂Ph, SbPh₃) respectively. The treatment of ruthenium(II) blue solution with AsMePh₂, AsMe₂Ph and SbPh₃ in alcohol resulted in the formation of the complexes; RuCl₂L₃ (L = AsMePh₂, AsMe₂Ph and SbPh₂), respectively. The reaction of RuCl₂(DMSO)₄ with the bidentate ligands 1,2 bis (diphenylarsino)methane (DPAM), 1,2 bis(diphenylarsino)ethane (DPAE) and 1,2 bis (diphenylphosphino)methane (DPPM). 1,2 bis(diphenylphosphino)ethane (DPPE), in ethanol gave the complexes RuCl₂(DPAM)₂, RuCl₂(DPAE)₂, RuCl₂ (DPPM)₂ RuCl₂(DPPE)₂, respectively. The complexes thus obtained undergo reaction with carbon monoxide, hydrogen, molecular nitrogen and nitric oxide to yield a variety of mixed ligand complexes.     

Excitation-energy migration in self-assembled cyclic zinc(II)-porphyrin arrays: a close mimicry of a natural light-harvesting system

The excitation-energy-hopping (EEH) times within two-dimensional cyclic zinc(II)-porphyrin arrays 5 and 6, which were prepared by intermolecular coordination and ring-closing metathesis reaction of olefins, were deduced by modeling the EEH process based on the anisotropy depolarization as well as the exciton-exciton annihilation dynamics. Assuming the number of energy-hopping sites N = 5 and 6, the two different experimental observables, that is, anisotropy depolarization and exciton-excition annihilation times, consistently give the EEH times of 8.0 +/- 0.5 and 5.3 +/- 0.6 ps through the 1,3-phenylene linkages of 5 and 6, respectively. Accordingly, the self-assembled cyclic porphyrin arrays have proven to be well-defined two-dimensional models for natural light-harvesting complexes.     

Fast folding of a four-helical bundle protein

The FK506-FKBP12 binding-domain of the kinase FRAP (FRB) forms a classic up-down four-helical bundle. The folding pathway of this protein has been investigated using a combination of equilibrium and kinetic studies. The native state of the protein is stable with respect to the unfolded state by some 7 kcal mol(-1) at pH 6.0, 10 degrees C. A kinetic analysis of unfolding and refolding rate constants as a function of chemical denaturant concentration suggests that an intermediate state may be populated during folding at low concentrations of denaturant. The presence of this intermediate state is confirmed by refolding experiments performed in the presence of the hydrophobic dye 8-anilinonaphthalene-1 sulfonate (ANS). ANS binds to the partially folded intermediate state populated during the folding of FRB and undergoes a large change in fluorescence that can be detected using stopped-flow techniques. Analysis of the kinetic data suggests that the intermediate state is compact and it may even be a misfolded species that has to partially unfold before it can reach the transition state. Folding and unfolding rate constants in water are approximately 150-200 s(-1) and 0.005-0.06 s(-1), respectively, at neutral pH and 10 degrees C. The folding of FRB is somewhat slower than for other all-helical proteins, probably as a consequence of the formation of a metastable intermediate state. The folding rate constant in the absence of any populated intermediate can be estimated to be 8800 s(-1). Despite the presence of an intermediate state, which effectively slows folding, the protein still folds rapidly with a half-life of 5 ms at 10 degrees C. The dependence of the rate constants on denaturant concentration indicates that the transition state for folding is compact with some 80% of the surface area exposed in the unfolded state buried in the transition state. Data presented for FRB is compared with kinetic data obtained for other all-helical proteins.     

Level of some minor and trace elements in Bangladeshi meat products

An investigation on the level of some minor and trace elements in some varieties of meat (beef, mutton and chicken) consumed in Bangladesh is reported. In this study, protoninduced X-ray emission (PIXE) and radioisotope-induced X-ray fluorescence (XRF) techniques were used for analytical measurements. In PIXE measurements, the samples were exposed to the proton beam in air as 1 mm thick pellets and irradiated with 2.0 MeV protons having the beam intensity of 30 nA for characteristic X-ray excitation, whereas in XRF, the samples were excited for 5000 seconds with a 10 mCi¹⁰⁹Cd annular X-ray source. The elemental concentrations of Ca, Mn, Fe, Ni, Cu, Zn, As, Se, Br, Rb and Sr were determined in the samples by comparison with X-ray yield curves constructed from IAEA and NBS standard reference materials. The significance of the results is dicussed in relation to human health and diseases.This research received financial support from the International Atomic Energy Agency, Vienna, under the research contract RC-4265/RB.     

Effects of Nonionic and Mixed Cationic-Nonionic Micelles on the Rate of Alkaline Hydrolysis of 4-Nitrophthalimide

Pseudo-first-order rate constants (k_obs) for alkaline hydrolysis of 4-nitrophthalimide show a monotonic decrease with increase in [C₁₂E₂₃]_T (total concentration of Brij 35) at constant [CH₃CN] and [NaOH]. This micellar effect is explained in terms of a pseudophase micelle model. The rate of hydrolysis becomes too slow to monitor at [C₁₂E₂₃]_T≥0.03 M in the absence of cetyltrimethylammonium bromide (CTABr) and at [C₁₂E₂₃]_T≥0.04 M in the presence of 0.006–0.02 M CTABr at 0.01 M NaOH. The plots of k_obs versus [C₁₂E₂₃]_T show minima at 0.006 and 0.01 M CTABr, while such a minimum is not visible at 0.02 M CTABr.     

Production and Purification of Pectinase from Bacillus subtilis 15A-B92 and Its Biotechnological Applications

Enzymes that degrade pectin are called pectinases. Pectinases of microbial origin are used in juice clarification as the process is cost-effective. This study screened a pectinase-producing bacterium isolated from soil and identified as Bacillus subtilis 15A B-92 based on the 16S rRNA molecular technique. The purified pectinase from the isolate showed 99.6 U/mg specific activity and 11.6-fold purity. The molecular weight of the purified bacterial pectinase was 14.41 ± 1 kD. Optimum pectinase activity was found at pH 4.5 and 50 °C, and the enzyme was 100% stable for 3.5 h in these conditions. No enzymatic inhibition or activation effect was seen with Fe²⁺, Ca²⁺, or Mg²⁺. However, a slight inhibition was seen with Cu²⁺, Mn²⁺, and Zn²⁺. Tween 20 and 80 slightly inhibited the pectinase, whereas iodoacetic acid (IAA), ethylenediaminetetraacetate (EDTA), urea, and sodium dodecyl sulfate (SDS) showed potent inhibition. The bacterial pectinase degraded citrus pectin (100%); however, it was inactive in the presence of galactose. With citrus pectin as the substrate, the Km and Vmax were calculated as 1.72 mg/mL and 1609 U/g, respectively. The high affinity of pectinase for its substrate makes the process cost-effective when utilized in food industries. The obtained pectinase was able to clarify orange and apple juices, justifying its application in the food industry.     

Three New Acrylic Acid Derivatives from Achillea mellifolium as Potential Inhibitors of Urease from Jack Bean and α-Glucosidase from Saccharomyces cerevisiae

(1) Background: Achillea mellifolium belongs to a highly reputed family of medicinal plants, with plant extract being used as medicine in indigenous system. However, limited data is available regarding the exploitation of the medicinal potential of isolated pure compounds from this family; (2) Methods: A whole plant extract was partitioned into fractions and on the basis of biological activity, an ethyl acetate fraction was selected for isolation of pure compounds. Isolated compounds were characterized using different spectroscopic techniques. The compounds isolated from this study were tested for their medicinal potential using in-vitro enzyme assay, coupled with in-silico studies; (3) Results: Three new acrylic acid derivatives (1–3) have been isolated from the ethyl acetate fraction of Achillea mellifolium. The characterization of these compounds (1–3) was carried out using UV/Vis, FT-IR, 1D and 2D-NMR spectroscopy (¹H-NMR, ¹³C-NMR, HMBC, NOESY) and mass spectrometry. These acrylic acid derivatives were further evaluated for their enzyme inhibition potential against urease from jack bean and α glucosidase from Saccharomyces cerevisiae, using both in-silico and in-vitro approaches. In-vitro studies showed that compound 3 has the highest inhibition against urease enzyme (IC₅₀ =10.46 ± 0.03 μΜ), followed by compound 1 and compound 2 with percent inhibition and IC₅₀ value of 16.87 ± 0.02 c and 13.71 ± 0.07 μΜ, respectively, compared to the standard (thiourea-IC₅₀ = 21.5 ± 0.01 μΜ). The investigated IC₅₀ value of compound 3 against the urease enzyme is two times lower compared to thiourea, suggesting that this compound is twice as active compared to the standard drug. On the other hand, all three compounds (1–3) revealed mild inhibition potential against α-glucosidase. In-silico molecular docking studies, in combination with MD simulations and free energy, calculations were also performed to rationalize their time evolved mode of interaction inside the active pocket. Binding energies were computed using a MMPBSA approach, and the role of individual residues to overall binding of the inhibitors inside the active pockets were also computed; (4) Conclusions: Together, these studies confirm the inhibitory potential of isolated acrylic acid derivatives against both urease and α-glucosidase enzymes; however, their inhibition potential is better for urease enzyme even when compared to the standard.     

A New Entropy Function to Analyze Isentropic Processes of Ideal Gases with Variable Specific Heats

A new entropy function s⁺ is defined in terms of the existing entropy function s° and temperature as s⁺ = s° − R lnT to facilitate the analysis of isentropic processes of ideal gases with variable specific heats. The function s⁺ also makes it possible to calculate the entropy changes of ideal gases during processes when volume information is available instead of pressure information and the variation of specific heats with temperature is to be accounted for. The introduction of the function s⁺ eliminates the need to use the dimensionless isentropic functions relative pressure P_r and relative specific volume v_r of ideal gases and to tabulate their values. The P_r and v_r data are often confused with pressure and specific volume, with an adverse effect on the study of the second law of thermodynamics. The new s⁺ function nicely complements the existing s° function in entropy change calculations: the former is conveniently used when volume information is given while the latter is used when pressure information is available. Therefore, the introduction of the new entropy function s⁺ is expected to make a significant contribution to the thermodynamics education and research by streamlining entropy analysis of ideal gases.