Highly regioselective synthesis of trifluoromethyl derivatives of pyrazolo[1,5-a]pyrimidines bearing fused cycloalkane rings using (2-ethoxycycloalkenyl)-2,2,2-trifluoroethanones

8-Trifluoromethyl-6,7-dihydro-5H-1,4,8a-triaza-s-indacene and 9-trifluoromethyl-5,6,7,8-tetrahydropyrazolo[5,1-b]quinazolines were efficiently generated by condensation of 5(3)-aminopyrazoles with (2-ethoxycycloalkenyl)-2,2,2-trifluoroethanones and isolated in excellent yields. The regiochemistry of the prepared compounds was established by ¹H, ¹³C and ¹⁹F NMR spectroscopy and X-ray diffraction analysis.     

Amidation of deltacyclene and hexacyclic norbornadiene dimers with acetonitrile and water catalyzed by FeCl3·6H2O

Abstract

FeCl₃·6H₂O-catalyzed Ritter amidation of deltacyclene and hexacyclic norbornadiene dimers containing both a double bond and a three-carbon ring in the molecule with acetonitrile and water was performed. Depending on the hydrocarbon structure, the reaction proceeds via C-C bond cleavage in the three-carbon ring or at the double bond to form the corresponding N-acetamides.     

Hydration and dielectric properties of aqueous solutions of protonated diallylmethylammonium polymer: transition from monomer to polymer

Abstract

The high-frequency dielectric relaxation of aqueous solutions of protonated diallylammonium polyelectrolyte, namely poly(diallylmethylammonium trifluoroacetate) has been studied at the maximum water dispersion frequencies, 7.5–25?GHz, and temperatures of 288, 298, and 308?K. Dielectric relaxation parameters have been calculated and compared with similar characteristics of aqueous solutions of monomer, diallylmethylammonium trifluoroacetate, and pyrrolidinium trifluoroacetate salt simulated structure of pyrrolidinium polymer link. It has been concluded that although the monomer features hydrophobic hydration, its polymer exhibits hydrophilic hydration properties. This change is related to conformation of hydrophilic-hydrophobic polycations in aqueous solutions and the change in the structure of polymer links.     

MVF Sensor Enables Analysis of Nucleic Acids with Stable Secondary Structures

One major challenge in nucleic acids analysis by hybridization probes is a compromise between the probe's tight binding and sequence‐selective recognition of nucleic acid targets folded into stable secondary structures. We have been developing a four‐way junction (4WJ)‐based sensor that consists of a universal stem‐loop (USL) probe immobilized on an electrode surface and two adaptor strands (M and F). The sensor was shown to be highly selective towards single base mismatches at room temperature, able to detect multiple targets using the same USL probe, and have improved ability to detect folded nucleic acids. However, some nucleic acid targets, including natural RNA, are folded into very stable secondary and tertiary structures, which may represent a challenge even for the 4WJ sensors. This work describes a new sensor, named MVF since it uses three probe stands M, V and F, which further improves the performance of 4WJ sensors with folded targets. The MVF sensor interrogating a 16S rRNA NASBA amplicon with calculated folding energy of ?32.82 kcal/mol has demonstrated 2.5‐fold improvement in a signal‐to‐background ratio in comparison with a 4WJ sensor lacking strand V. The proposed design can be used as a general strategy in the analysis of folded nucleic acids including natural RNA.     

Synthesis of phosphorylated derivatives of isatin with sterically hindered phenol fragments

The synthesis of N-[dimethoxyphosphoryl-(3,5-di-tert-butyl-4-hydroxyphenyl)] methylisatins has been performed by the addition of isatin and 5-butylisatin to the double bond of dimethyl-(3,5-di-tert-butyl-4-oxo-2,5-cyclohexadienylidene)methylphosphonate. Subsequent functionalization of the compounds synthesized with thiosemicarbazide hydrochloride, 3-(3′,5′-di-tert-butyl-4′-hydroxyphenyl)propionic acid hydrazide, and isonicotinic acid. Hydrazide gave isatin derivatives containing several pharmacophore fragments. Each of them has the ability to the increase the antioxidant and biological activities of these compounds.     

High-resolution Mn EXAFS of the oxygen-evolving complex in photosystem II: structural implications for the Mn4Ca cluster

The biological generation of oxygen by the oxygen-evolving complex in photosystem II (PS II) is one of nature's most important reactions. The recent X-ray crystal structures, while limited by resolutions of 3.2-3.5 A, have located the electron density associated with the Mn4Ca cluster within the multiprotein PS II complex. Detailed structures critically depend on input from spectroscopic techniques, such as EXAFS and EPR/ENDOR, as the XRD resolution does not allow for accurate determination of the position of Mn/Ca or the bridging and terminal ligand atoms. The number and distances of Mn-Mn/Ca/ligand interactions determined from EXAFS provide important constraints for the structure of the Mn4Ca cluster. Here, we present data from a high-resolution EXAFS method using a novel multicrystal monochromator that show three short Mn-Mn distances between 2.7 and 2.8 A and, hence, the presence of three di-mu-oxo-bridged units in the Mn4Ca cluster. This result imposes clear limitations on the proposed structures based on spectroscopic and diffraction data and provides input for refining such structures.     

New phosphonium salts based on 3-(diphenylphosphino)propanoic and ω-haloalkanoic acids

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Planar Chiral Rhodium Complexes of 1,4-Benzoquinones

Diene rhodium complexes are important catalysts in modern organic synthesis. Herein, we report a new approach to such complexes with the uncommon planar chirality. The synthesis is achieved by face-selective coordination of the prochiral 2,5-disubstituted-1,4-benzoquinones (R₂-Q) with rhodium precursors containing the chiral auxiliary ligand S-salicyl-oxazoline (S-Salox). Such coordination leads to the formation of (R,R-R₂-Q)Rh(S-Salox) complexes in high yields and with exceptional diastereoselectivity (d. r.>20 : 1). Subsequent replacement of the auxiliary ligand provides various benzoquinone rhodium complexes with retention of the planar chirality. Combined theoretical and experimental studies show that due to their electron-withdrawing nature benzoquinones bind metals stronger than the related 1,4-cyclohexadiene, but weaker than other common diene ligands, such as cyclooctadiene.     

Numerical Modeling of Pollutant Dispersion and Oil Spreading by the Stochastic Discrete Particles Method

We consider two applications of the stochastic discrete particles method. The first one is concerned with the dispersion of a passive pollutant by a turbulent stream with a scale dependent diffusion coefficient. The second application deals with the problem of an oil spill spreading on the water surface described by transport–diffusion equation with a nonlinear diffusion coefficient. For the first problem we develop a discrete particles algorithm provided the diffusion coefficient obeys Richardson's 4/3 law and show good correspondence with the numerical and analytical results. The second problem is more involved and we develop a heuristic procedure based on the standard discrete particles random walk algorithm updating the dependence of each particle step variance on the dependent function. The obtained solution coincides well with analytical and direct one-dimensional finite-difference solutions both for instantaneous and continuous oil release.