Photoinduced Formation of an Azobenzene‐Based CD‐Active Supramolecular Cyclic Dimer

A series of new photo‐responsive amino acid‐derived azobenzenedicarboxylic acid derivatives (S)‐ 1 a – e were synthesized. Compound (S)‐ 1 a in the trans form exhibited no circular dichroism (CD) signal in DMF under ambient conditions, whereas intense Cotton effects were observed upon UV irradiation, indicating the formation of a chiral supramolecular structure in the cis form. The CD signals disappeared when trifluoroacetic acid (TFA) was added to the solution. The ester counterpart [(S)‐ 1 a′ ] showed no CD signal. Hydrogen bonding between the carboxy groups seemed necessary for constructing the supramolecular structure. The kinetic studies of cis to trans isomerization of (S)‐ 1 a demonstrated that the formation of a chiral supramolecule enhances the stability of the cis‐azobenzene structure. The ESI mass spectrum of stilbenedicarboxylic acid (S)‐ 4 , an analogue of (S)‐ 1 b , confirmed the formation of a dimer. A theoretical CD study revealed that (S)‐ 1 a in the cis form should be present as a cyclic chiral dimer.     

Polymorphic and pseudomorphic transformation behavior of acyclovir based on thermodynamics and crystallography

Acyclovir (ACV) has two polymorphs, anhydrate 1 and anhydrate 2, and two hydrates, 2/3 hydrate and dihydrate. The effect of polymorphic transformation of ACV on the temperature and humidity was evaluated by simultaneous XRD-DSC and vapor sorption analysis. Each crystal structure of ACV was analyzed by single crystal analysis and powder X-ray diffraction analysis. On the polymorphic and pseudomorphic transformation, anhydrate 1 did not directly transform to anhydrate 2, but transform through 2/3 hydrate and dihydrate due to relative humidity and temperature. According to the molecular packing for four crystals, there are two packing manners for purine moiety. Anhydrate 1, anhydrate 2, 2/3 hydrate and dihydrate were packed in parallel, anti parallel, mixture of parallel–anti parallel and parallel manners, respectively. Base on the packing manner of ACV, it can be seen why the phase transformation occurs with readily or with difficulty. The thermodynamic relation of anhydrate form 1 and form 2 was evaluated by DSC and microcalorimetry. It was found that these two forms are monotropic forms, with anhydrate form I is stable form and it transform to a new form 3 at 443.2 K.     

Synthetic Studies on Sialoglycoconjugates 104: Synthesis of Kdn-Lewis X Ganglioside Analogs Containing Modified Reducing Terminal and L-Rhamnose in Place of L-Fucose 1 2

Abstract

KDN-Le^x ganglioside analogs (10, 13, 16 and 19) containing the modified reducing terminal and L-rhamnose in place of L-fucose have been synthesized. Glycosidation of methyl 2,3,4-tri-O-benzyl-1-thio-α-L-rhamnopyranoside (1) with 2-(trimethylsilyl)ethyl O-(2-acetamido-4,6-O-benzylidene-2-deoxy-β-D-glucopyranosyl)-(1→3)-O-(2,4,6-tri-O-benzyl-α-D-galacopyranoside (2), followed by reductive ring opening of the benzylidene acetal, gave 2-(trimethylsilyl)ethyl O-(2,3,4-tri-O-benzyl-α-L-rhamnopyranosyl)-(1→3)-O-(2-acet-amido-6-O-benzyl-2-deoxy-β-D-glucopyranosyl)-(1→3)-O-(2,4,6-tri-O-benzyl-β-D-galactopyranosyl)-(1→4)-2,3,6-tri-O-benzyl-β-D-glucopyranoside (4). The tetrasaccharide 4 was coupled with methyl O-(methyl 4,5,7,8,9-penta-O-acetyl-3-deoxy-D-glycero-α-D-galacto-2-nonulopyranosylonate)-(2→3)-2,4,6-tri-O-benzoyl-1-thio-β-D-galactopyranoside(5), using dimethyl(methylthio)sulfonium triflate (DMTST), to give the hexasaccharide 6, which was converted into compound 11 in the usual manner. Compounds 8 and 11 were transformed, via bromination of the reducing terminal, radical reduction, O-deacylation and saponification of the methyl ester, into the desired KDN-Le^x hexasaccharides (10, 13). On the other hand, glycosylation of 2-(tetradecyl)hexadecanol with α-trichloroacetimidates 14 and 17, afforded the target ganglioside analogs 16 and 19.

     

Scalable free energy calculation of proteins via multiscale essential sampling

A multiscale simulation method, "multiscale essential sampling (MSES)," is proposed for calculating free energy surface of proteins in a sizable dimensional space with good scalability. In MSES, the configurational sampling of a full-dimensional model is enhanced by coupling with the accelerated dynamics of the essential degrees of freedom. Applying the Hamiltonian exchange method to MSES can remove the biasing potential from the coupling term, deriving the free energy surface of the essential degrees of freedom. The form of the coupling term ensures good scalability in the Hamiltonian exchange. As a test application, the free energy surface of the folding process of a miniprotein, chignolin, was calculated in the continuum solvent model. Results agreed with the free energy surface derived from the multicanonical simulation. Significantly improved scalability with the MSES method was clearly shown in the free energy calculation of chignolin in explicit solvent, which was achieved without increasing the number of replicas in the Hamiltonian exchange.     

Pulsed laser deposition synthesis of superconducting (Cu,C)Ba2CuOx thin films

(Cu, C)–Ba–O thin films have been deposited at low growth temperature of 450–570 °C by pulsed laser deposition method. A control of CO₂ gas pressure and the growth temperature, usage of BaCu_yO_x pellet target resulted in an expansion of twice c-axis length of BaCuO₂ structure (2c phase) and a significant rise of conductivity. Measurements of in-situ XPS suggest that the 2c phase should be (Cu, C)Ba₂CuO_x [(Cu, C)-1201]. The maximum temperature of onset of the superconducting transition and zero resistance state obtained so far were 60 and 47 K, respectively.     

In situ characterization of transport properties of superconducting (Cu, C)-system thin films

Transport properties of (Cu, C)Ba₂CuO_x [(Cu, C)-1201] thin films have been characterized by in situ temperature dependence of resistivity, without breaking vacuum from the deposition to the measurement. In in situ transport properties measurements, the obtained results reveal that (Cu, C)Ba₂CuO_x films exhibit T_c > 20 K on the cased of conductivity at 290 K (σ_[290 K]) > 4 × 10² S/cm and temperature coefficient of resistivity (TCR) > 1.5 × 10^?3 K^?1, and doping level of them should be in between under-doped and optimally-doped states. Their results suggest that there would be possible to further increases of T_c, and XPS data suggest that (Cu, C)-system should have the excellent dopability in their charge reservoir and the possibility of low anisotropy.     

Nitration reactions of astaxanthin and β-carotene by peroxynitrite

The in vitro reactivities of astaxanthin and β-carotene toward peroxynitrite were investigated and the reaction products after scavenging with peroxynitrite were analyzed. A series of carotenoids substituted with nitro group, 14′-s-cis-15′-nitroastaxanthin, 10′-s-cis-11′-cis-11′-nitroastaxanthin, 14′-s-cis-15′-nitro-β-carotene and 10′-s-cis-11′-cis-11′-nitro-β-carotene, were isolated from the reaction products of carotenoids with peroxynitrite. Carotenoids with nitro derivatives were reported for the first time. These results indicated that astaxanthin and β-carotene could catch peroxynitrite or nitrogen dioxide radical (NO₂) in their molecule to form nitrocarotenoids.