Synthesis and spectroscopic characterization of copper(II)-nitrito complexes with hydrotris(pyrazolyl)borate and related coligands

This study focuses on the geometric (molecular) structures, spectroscopic properties, and electronic structures of copper(II)-nitrito complexes as a function of second coordination sphere effects using a set of closely related coligands. With anionic hydrotris(pyrazolyl)borate ligands, one nitrite is bound to copper(II). Depending on the steric demand of the coligand, the coordination mode is either symmetric or asymmetric bidentate, which leads to different ground states of the resulting complexes as evident from EPR spectroscopy. The vibrational spectra of these compounds are assigned using isotope substitution and DFT calculations. The results demonstrate that nu sym(N-O) occurs at higher energy than nu asym(N-O), which is different from the literature assignments for related compounds. UV-vis absorption and MCD spectra are presented and analyzed with the help of TD-DFT calculations. The principal binding modes of nitrite to Cu(II) and Cu(I) are also investigated applying DFT. Using a neutral tris(pyrazolyl)methane ligand, two nitrite ligands are bound to copper. In this case, a very unusual binding mode is observed where one nitrite is eta1-O and the other one is eta1-N bound. This allows to study the properties of coordinated nitrite as a function of binding mode in one complex. The N-coordination mode is easily identified from vibrational spectroscopy, where N-bound nitrite shows a large shift of nu asym(N-O) to >1400 cm-1, which is a unique spectroscopic feature. The optical spectra of this compound exhibit an intense band around 300 nm, which might be attributable to a nitrite to Cu(II) CT transition. Finally, using a bidentate neutral bis(pyrazolyl)methane ligand, two eta1-O coordinated nitrite ligands are observed. The vibrational and optical (UV-vis and MCD) spectra of this compound are presented and analyzed.     

Analysis of mismatched DNA by mismatch binding ligand (MBL)–Sepharose affinity chromatography

Mismatch binding molecules (MBLs), strongly and selectively bound to the mismatched base pair in duplex DNA, were immobilized on Sepharose. Three MBL–Sepharose columns were prepared with three MBLs, naphthyridine dimer (ND), naphthyridine–azaquinolone (NA), and aminonaphthyridine dimer (amND), which exhibited different binding profiles to the mismatched base pairs. These three MBL–Sepharose columns showed characteristic elution profiles for DNA duplexes containing mismatched base pairs. The ND–Sepharose column separated the G–G and G–A mismatched DNA from fully matched duplexes. The NA–Sepharose column separated the A–A and G–A mismatched DNA from other DNA duplexes. The amND–Sepharose column separated the C–C mismatched DNA. These chromatographic profiles were very consistent with the binding preference of each MBL. By changing the elution conditions from sodium hydroxide to sodium chloride, MBL–Sepharose columns were also able to separate the mismatched DNA that weakly bound to the MBL from fully matched DNA duplex. Figure MBL-Sepharose affinity chromatography successfully separates the mismatched duplex DNA from fully matched duplex.     

Construction of stereodefined 1,1,2,2-tetrasubstituted cyclopropanes by acid catalyzed reaction of aryldiazoacetates and alpha-substituted acroleins

Michael-initiated ring closure of aryldiazoacetates and alpha-substituted acroleins under acid catalysis offers a unique opportunity for the stereoselective formation of various tetrasubstituted cyclopropanes.     

Studies of autoignition-assisted nonpremixed cool flames

Autoignition-assisted nonpremixed cool flames of diethyl ether (DEE) are investigated in both laminar counterflow and turbulent jet flame configurations. First, the ignition and extinction limits of laminar nonpremixed cool flames of diluted DEE are measured and simulated using detailed kinetic models. The laminar flame measurements are used to validate the kinetic models and guide the turbulent flame measurements. The results show that, below a critical mixture condition, for elevated temperature and dilute mixtures, the cool flame extinction limit and the low-temperature ignition limit merge, leading to autoignition-assisted cool flame stabilization without hysteresis. Based on the findings from the laminar flame experiments, autoignition-assisted turbulent lifted cool flames are established using a Co-flow Axisymmetric Reactor-Assisted Turbulent (CARAT) burner. The lift-off heights of the turbulent cool flames are quantified using formaldehyde planar laser-induced fluorescence. Based on an analogy with autoignition-assisted lifted hot flames, a correlation is proposed such that the autoignition-assisted cool flame lift-off height scales with the product of the flow velocity and the square of the first-stage ignition delay time. Using this scaling, we demonstrate that the kinetic mechanism that most accurately predicts the laminar flame ignition and extinction limits also best predicts the turbulent cool flame lift-off height.     

Cavity ring‐down spectroscopic study of the kinetics of the reactions of FCO radicals with O2 and NO at 295 K

Cavity ring‐down UV absorption spectroscopy was used to study the kinetics of the recombination reaction of FCO radicals and the reactions with O₂ and NO in 4.0–15.5 Torr total pressure of N₂ diluent at 295 K. k(FCO + FCO) is (1.8 ± 0.3) × 10⁻¹¹ cm³ molecule⁻¹ s⁻¹. The pressure dependence of the reactions with O₂ and NO in air at 295 K is described using a broadening factor of Fc = 0.6 and the following low (k₀) and high (k_∞) pressure limit rate constants: k₀(FCO + O₂) = (8.6 ± 0.4) × 10⁻³¹ cm⁶ molecule⁻¹ s⁻¹, k_∞(FCO + O₂) = (1.2 ± 0.2) × 10⁻¹² cm³ molecule⁻¹ s⁻¹, k₀(FCO + NO) = (2.4 ± 0.2) × 10⁻³⁰ cm⁶ molecule⁻¹ s⁻¹, and k_∞ (FCO + NO) = (1.0 ± 0.2) × 10⁻¹² cm³ molecule⁻¹ s⁻¹. The uncertainties are two standard deviations. © 2001 John Wiley & Sons, Inc. Int J Chem Kinet 33: 130–135, 2001     

Genetic diagnosis by polymerase chain reaction and electrospray ionization mass spectrometry: Detection of five base deletion from blood DNA of a familial adenomatous polyposis patient

A 5-base deleted mutation of adenomatous polyposis coli (APC) gene was detected by using electrospray ionization mass spectrometry of polymerase chain reaction (PCR) products. Genomic DNA was extracted from a familial adenomatous polyposis patient blood, and a 57-base pairs segment of APC gene was amplified by PCR. The PCR products were purified, digested with restriction endonuclease, purified, and determined by electrospray mass spectrometry.     

Structural analysis of photo-oxidized (ethylenediamine)bis(2,2′-bipyridine)ruthenium(II) complexes by using on-line electrospray mass spectrometry of labeled compounds

Photo-oxidation of Ru(bpy)₂(en)²⁺, where bpy = 2,2′-bipyridine, en = ethylenediamine, was studied in isotopic labeling experiments by using on-line electrospray mass spectrometry (ESMS). The complex was known to undergo photochemical dehydrogenation of a fourelectron oxidation, giving the α,α′-diimine complexes in a stepwise manner via a two-electron-oxidized intermediate that represents loss of two hydrogen atoms from the en ligand. On-line mass analysis after photoirradiation (λ > 420 nm) of Ru(bpy)₂(ed)²⁺ (ed = ethylene-d₄diamine) showed that the ligand of the intermediate with loss of two hydrogen atoms was not an enamine but had an imine structure. Also, a ligand-oxygenated complex that has mass 14 amu higher than the Ru(bpy)₂(en)²⁺ complex was observed in the ES mass spectra. The ligand of this complex was proposed to have a nitroso structure as a primary product in ¹⁸O₂ experiments. The oxygenated complex was not generated in a stepwise manner via the imine intermediate, but directly by loss of two amino hydrogen atoms and addition of an oxygen atom. The source of the oxygen atom would be from oxygen dissolved in solution rather than from water in solution. Another oxygenated complex Ru(bpy)₂(NO ₂ ^#x2212; )⁺ was produced by irradiation and the structure was identified in ¹⁸O₂ experiments.     

Ring-opening polymerization of cyclobutane adduct of dimethyl 1,1-dicyanoethylene-2,2-dicarboxylate and ethyl vinyl ether

For an extension of the work on the ring-opening polymerizations of cyclobutane adducts of strong donor olefins and strong acceptor olefins yielding novel alternating copolymers of those olefins, the ring-opening polymerization of the cyclobutane adduct 3 of dimethyl 1,1-dicyanoethylene-2,2-dicarboxylate (DDED) and ethyl vinyl ether (EVE) is investigated. Cyclobutane 3 reacted with methanol and acetic acid at ambient temperature to yield the corresponding ring-opened adducts. The polymerizations of 3 were carried out with anionic initiators, tertiary amines, ammonium halides, and Lewis acids, respectively, according to the polymerization methods of the cyclobutane adduct 1 of tetracyanoethylene (TCNE) and EVE. All these polymerization catalysts except for ammonium halides were effective for the polymerization of 3 , yielding alternating copolymers of DDED and EVE. The chain transfer reactions of the polymerization with anionic initiators are also discussed on the basis of a model reaction. © 1997 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 35: 1563–1570, 1997