Synthesis and electronic properties of hexylthiophene-octaethylporphyrin derivatives (HTh-OEP) connected with diacetylene linkage: substituent effect on the electronic structure of the extended HTh-OEP conjugation system

Octaethylporphyrin (OEP) was combined with 2-substituted 3-hexylthiophenes (HTh) by diacetylene linkage to afford the highly extended conjugation system (HTh-OEP). Their absorption spectral properties were examined, proving that the electronic structure of OEP is affected by the more electron-withdrawing substituents through the diacetylene linkage more dramatically. The substituent effect on the HTh-OEP conjugation system is much outstanding, as compared with that on the corresponding benzene system (Bzn-OEP).     

Synthesis of the racemic and optically active forms of gizzerosine,the inducer of gizzard erosion in chicks

The racemate and both the (R)- and (S)-forms of gizzerosine [2-amino-9-(4-imidazolyl)-7-azanonanoic acid] were synthesised, and the (S)-isomer was identified as the toxic substance in fish meal causing severe gizzard erosion (black vomit) in chicks.     

Structure of monardaein,a bis-malonylated anthocyanin isolated from golden balm, monarda didyma

Structure of monardaein was determined to be 3-0-(6-0-$\text{trans}$-p-coumaryl-β-D-glucopyranosyl)-5-O- (4,6-di-O-malonyl-β-D-glucopyranosyl) pelargonidin (1).     

Self-organized arrays of submicrometer particle of organic dye and its near-field optical study

Organic dye particles of micrometer and submicrometer diameters were prepared by a wetting/dewetting procedure on a hydrophilic glass surface and a self-organized one- or two-dimensional registration was observed. To analyze the molecular assembly in these particles the near-field-excited near-field fluorescence from single particles were detected, while the majority of particles with diameters around 2 μm or less did not show fluorescence. Far-field fluorescence, in contrast, was observed for every particle, and the intensity depended on the excitation polarization when a polarized evanescent field was used for excitation, indicating that the molecules’ transition moment within dye particles orient parallel to the substrate surface. These two observations suggest that the near-field at the tip of the probe was polarized parallel to the probe axis. Another observation, that neighboring particles show similar molecular orientations, suggests that the dewetting process contributed to the alignment of the molecular directions in adjacent particles, which further proves that the dye particles were formed by a self-organizing mechanism.     

A new nonpeptide tachykinin NK1 receptor antagonist isolated from the plants of Compositae

To find new tachykinin NK1 receptor antagonists from natural sources, we examined the tachykinin antagonist activity in the extracts of approximately 200 species of plants by the use of isolated guinea pig ileum. As a result, we discovered a novel and potent NK1 receptor antagonist in the extract of dried flowers of Matricaria chamomilla L. (chamomile). The structure of the antagonist was established as N1,N5,N10,N14-tetrakis[3-(4-hydroxyphenyl)-2-propenoyl]-1,5,10,14-tetraazatetradecane (tetracoumaroyl spermine, 1a). The Ki values of 1a, estimated from the inhibitory action on the substance P (SP)-induced contraction of the guinea pig ileum and the inhibition of the binding of [3H][Sar9, Met(O2)11]SP to human NK1 receptors, were 21.9 nM and 3.3 nM, respectively. 1a is the first potent NK1 receptor antagonist from natural sources and it has a unique structure of a polyacylated spermine. 1a was concentrated in pollen of Matricaria chamomilla L. and was also found in the extracts of flowers of other four species of Compositae. In addition, we found N1,N5,N10-tris[3-(4-hydroxyphenyl)-2-propenoyl]-1,5,10,14-tetraazatetradecane (2) as a new compound in the extract of flowers of Matricaria chamomilla L., which did not exhibit any tachykinin antagonist activity. A number of related compounds were synthesized, and the structure-activity relationship was studied.     

Characterization of a gel-separated unknown glycoprotein by liquid chromatography/multistage tandem mass spectrometry: analysis of rat brain Thy-1 separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis

We developed an efficient and convenient strategy for protein identification and glycosylation analysis of a small amount of unknown glycoprotein in a biological sample. The procedure involves isolation of proteins by electrophoresis and mass spectrometric peptide/glycopeptide mapping by LC/ion trap mass spectrometer. For the complete glycosylation analysis, proteins were extracted in intact form from the gel, and proteinase-digested glycoproteins were then subjected to LC/multistage tandem MS (MSn) incorporating a full mass scan, in-source collision-induced dissociation (CID), and data-dependent MSn. The glycopeptides were localized in the peptide/glycopeptide map by using oxonium ions such as HexNAc+ and NeuAc+, generated by in-source CID, and neutral loss by CID-MS/MS. We conducted the search analysis for the glycopeptide identification using search parameters containing a possible glycosylation at the Asn residue with N-acetylglucosamine (203 Da). We were able to identify the glycopeptides resulting from predictable digestion with proteinase. The glycopeptides caused by irregular cleavages were not identified by the database search analysis, but their elution positions were localized using oxonium ions produced by in-source CID, and neutral loss by the data-dependent MSn. Then, all glycopeptides could be identified based on the product ion spectra which were sorted from data-dependent CID-MSn spectra acquired around localized positions. Using this strategy, we successfully elucidated site-specific glycosylation of Thy-1, glycosylphosphatidylinositol (GPI)-anchored proteins glycosylated at Asn23, 74, and 98, and at Cys111. High-mannose-type, complex-type, and hybrid-type oligosaccharides were all found to be attached to Asn23, 74 and 98, and four GPI structures could be characterized. Our method is simple, rapid and useful for the characterization of unknown glycoproteins in a complex mixture of proteins.     

Widely Applicable Deprotection Method of 2,2,2-Trichloroethoxycarbonyl (Troc) Group Using Tetrabutylammonium Fluoride

The N-Troc (2,2,2-trichloroethoxycarbonyl) groups in glucosamine and muramic acid derivatives were removed by treatment with tetrabutylammonium fluoride (TBAF) under mild conditions. The use of Troc protection for the amino group in aminosugars such as glucosamine is increasing the importance for selective and efficient glycosylation, and the cleavage method described here will expand the available opportunities for using the Troc group in the preparation of a variety of glycans. This cleavage is especially advantageous for compounds that are labile or may be decomposed under acidic conditions, strong basic conditions, or reductive conditions.     

Practical and Efficient Method for α-Sialylation with an Azide Sialyl Donor Using a Microreactor

Efficient α-sialylation with a C5 azide sialyl donor was investigated under microfluidic conditions using a microreactor composed of a Comet X-01 micromixer and a tube reactor. Precise temperature control realized excellent α-selectivity, and Siaα(2,6)Gal, Siaα(2,3)Gal, and Siaα(2,9)Sia disaccharides were obtained in moderate to good yields.     

Compressed holographic particle tracking velocimetry for microflow measurements

Optical Review - We have established a holographic particle tracking velocimetry (HPTV) technique based on compressed sensing (CS) for measurement of the velocity field of microflows in this study....     

Polymerization of trimethylene carbonate in aqueous solutions: Reaction mechanism and characterization

Polymerization of a trimethylene carbonate (TMC) in an aqueous solution was investigated by gel permeation chromatography, Fourier transform infrared spectroscopy, and nuclear magnetic resonance. The polymerization reaction proceeded rapidly in the aqueous solution and high conversion was achieved in a relatively short time. 1,3‐Propanediol (PPD) formed by hydrolysis of TMC was used as the initiator. The TMC oligomer obtained by ring‐opening polymerization had a TMC unit backbone with terminal 3‐hydroxypropyl groups at both chain ends. The oligomer underwent transesterification reaction with elimination of PPD, resulting in a gradual increase in the molecular weight of the product. The molecular weight was affected by the concentration of TMC. The thermal properties of the polymers were investigated by differential scanning calorimetry. Polymers within the molecular weight (M_n) range from 6.0 × 10³ to 2.3 × 10⁴ g/mol crystallized, and endothermic peaks corresponding to the melting temperature were observed. The glass transition temperature increased with the molecular weight of the polymers. © 2010 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 48: 1485–1492, 2010