Refinement of the NMR structures of alpha-conotoxin MI using molecular dynamics simulation with explicit solvent water and a full molecular force field

Three NMR structures of alpha-conotoxin MI, a potent antagonist of the nicotinic acetylcholine receptor, have been refined using molecular dynamics (MD) simulation with explicit water. Although the convergence of the NMR structures of alpha-conotoxin MI was not sufficient to provide detailed structural features, the average structures obtained from MD simulations converged to one conformation, providing structural characteristics. The resulting structure was also found to be consistent with the results of amide proton-exchange experiments. These results demonstrate that MD simulation with explicit solvent water is very useful in refining NMR structures.     

Studies on electron spin resonance spectroscopy of biradical molecules containing N-O and N-O moieties

The biradicals with ¹⁴N-Oxide and ¹⁵N-Oxide at the both ends of a molecule are synthesized for the molecular ruler of protein structure, and a potential device for quantum computing. We also establish a general synthetic method for reliable biradical formation. ESR spectra are recorded for the biradicals containing ¹⁵N-Oxide and ¹⁴N-Oxide with various interdistance separations. We find that two types of biradicals yielded different ESR spectra depending upon the distance between the ¹⁵N-O and ¹⁴N-O moieties in a molecule. This is due to electron spin dipole–dipole interaction occurring between the radicals. We also find that there is an indication of isotopic nuclear effects in the dipole–dipole interactions. The present study implies feasibility of the distance measurement between two different N-Oxides containing ¹⁴N and ¹⁵N isotopes. We conclude that quantum entanglement effects are observed through the dipolar interactions, which enable application of quantum computing devices operating in the liquid state.     

N-cyclopropylation of indoles and cyclic amides with copper(II) reagent

Copper-mediated coupling reactions of cyclopropylboronic acid with indoles and cyclic amides are described. The process utilizes catalytic or stoichiometric amounts of copper(II) acetate, DMAP, and NaHMDS at 95 degrees C under an atmosphere containing oxygen. A variety of functional groups remain intact throughout the reaction.     

Total Synthesis of Decahydroquinoline Poison Frog Alkaloids ent-cis-195A and cis-211A

The total synthesis of two decahydroquinoline poison frog alkaloids ent-cis-195A and cis-211A were achieved in 16 steps (38% overall yield) and 19 steps (31% overall yield), respectively, starting from known compound 1. Both alkaloids were synthesized from the common key intermediate 11 in a divergent fashion, and the absolute stereochemistry of natural cis-211A was determined to be 2R, 4aR, 5R, 6S, and 8aS. Interestingly, the absolute configuration of the parent decahydroquinoline nuclei of cis-211A was the mirror image of that of cis-195A, although both alkaloids were isolated from the same poison frog species, Oophaga (Dendrobates) pumilio, from Panama.     

Minimum standards of clinical practice for physical therapists working in intensive care units in Japan

Objective: Early mobilization and rehabilitation has become common and expectations for physical therapists working in intensive care units have increased in Japan. The objective of this study was to establish consensus-based minimum clinical practice standards for physical therapists working in intensive care units in Japan. It also aimed to make an international comparison of minimum clinical practice standards in this area. Methods: In total, 54 experienced physical therapists gave informed consent and participated in this study. A modified Delphi method with questionnaires was used over three rounds. Participants rated 272 items as “essential/unknown/non-essential”. Consensus was considered to be reached on items that over 70% of physical therapists rated as “essential” to clinical practice in the intensive care unit. Results: Of the 272 items in the first round, 188 were deemed essential. In round 2, 11 of the 62 items that failed to reach consensus in round 1 were additionally deemed essential. No item was added to the “essential” consensus in round 3. In total, 199 items were therefore deemed essential as a minimum standard of clinical practice. Participants agreed that 42 items were not essential and failed to reach agreement on 31 others. Identified 199 items were different from those in the UK and Australia due to national laws, cultural and historical backgrounds. Conclusions: This is the first study to develop a consensus-based minimum clinical practice standard for physical therapists working in intensive care units in Japan.     

Synthesis and Electrochemical and Photophysical Properties of Azaterrylene Derivatives

A series of terrylene derivatives, such as monoazaterrylene (MATerry), 1,6‐diazaterrylene (DiATerry) and pristine terrylene (Terry), were synthesized by changing the number of nitrogen atoms at the bay region (1 and 6 positions of the Terry core). The electrochemical measurements suggested that the first one‐electron reduction and oxidation potentials became positively shifted with increasing numbers of nitrogen atoms. This agreed with the energies of the corresponding highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) states estimated by DFT methods. In contrast, the HOMO–LUMO gaps approximately remained constant. This trend is quite similar to the spectroscopic behaviors observed by absorption and fluorescence spectra. The solvent polarity‐dependent spectroscopic trends of DiATerry suggested the intramolecular charge‐transfer (ICT) characters. The evaluation of the excited‐state dynamics in various solvents indicated the electronic configurational changes of the excited states relative to the ground state via the ICT. This was supported by the Lippert–Mataga plots. Finally, the reversible protonation and deprotonation processes were also observed.     

Estimation of active conformations of drugs by a new molecular superposing procedure

We have developed a new program, SUPERPOSE, to superpose two molecules based on the physicochemical properties of functional atoms within individual molecules. SUPERPOSE treats a pseudo-molecule consisting of functional atoms instead of a real molecule. Four types of physicochemical properties – hydrophobicity, presence of a hydrogen-bonding donor, presence of a hydrogen-bonding acceptor and presence of a hydrogen-bonding donor/acceptor – were supposed and a score was given to each overlap. When functional atoms with the same physicochemical properties were overlapped, points were added to the score, and when the functional atoms with different physicochemical properties were overlapped, points were subtracted. We applied SUPERPOSE to 12 pairs of 24 enzyme inhibitors and found that the best scored overlay for each inhibitor pair could successfully reproduce the superposition obtained from X-ray crystallography. Next, we applied SUPERPOSE to estimate the active conformations of the thrombin inhibitors MQPA, 4-TAPAP and NAPAP. Superpositions of conformers sampled by the high-temperature molecular dynamics calculation with respect to the three inhibitors were performed, and 13 sets of conformers having the best common overlay to the three inhibitors were selected. One among 13 sets was consistent with the superposition of the active conformations derived from the X-ray crystallography of the thrombin–inhibitor complexes.     

Conformational Analysis and Selection of Odor‐Active Conformers: Synthesis of Molecules Designed for the Lily‐of‐the‐Valley(Muguet)‐Type Odor

The selection of odor‐active conformers and the construction of a model for a targeted odor type, i.e., for the lily‐of‐the‐valley odor, were examined. The disagreement of the odors of 1,3,4,5‐tetrahydro‐2‐benzoxepin derivative 1 and 3‐[4‐(tert‐butyl)phenyl]‐2‐methylpropanal ( 2 ) is discussed in terms of their stable conformers. The conformer active for the lily‐of‐the‐valley odor was investigated by conformational analyses of several related compounds. Based on the integrated model consisting of the assumed active conformers (Fig. 5), compounds anticipated to possess the lily‐of‐the‐valley odor were designed and synthesized. The odor of synthetic 7‐(tert‐butyl)‐1,2,4,5‐tetrahydro‐3H‐benzocyclohepten‐3‐one ( 8 ) and 3‐[4‐(tert‐butyl)phenyl]cyclopentanone ( 13 ) were evaluated by perfumers to have a floral odor and to recall the lily‐of‐the‐valley and lilac odors, respectively. Our methodology to design new odoriferous compounds, based on conformational analysis, selection of odor‐active conformers, and construction of a model, proved to be satisfactory.     

Reaction of B2(o‐tol)4 with CO and Isocyanides: Cleavage of the C≡O Triple Bond and Direct C−H Borylations

The reaction of highly Lewis acidic tetra(o‐tolyl)diborane(4) with CO afforded a mixture of boraindane and boroxine by the cleavage of the C≡O triple bond. ¹³C labeling experiments confirmed that the carbon atom in the boraindane stems from CO. Simultaneously, formation of boroxine 3 could be considered as borylene transfer to capture the oxygen atom from CO. The reaction of diborane(4) with ^tBu?NC afforded an azaallene, while the reaction with Xyl?NC furnished cyclic compounds by direct C?H borylations.