Enzymatic reactivity and anti-tumor activity of 1-(beta-D-arabinofuranosyl)-2-thiocytosine derivatives

Sixteen derivatives of 1-(beta-D-arabinofuranosyl)-2-thiocytosine (araSC), including five 5'-esters, three 3'-esters, five N4-amides and three 5'-phosphodiesters, were synthesized and their reactivity to mouse tissue homogenates, including plasma, liver and intestine, and antitumor activity in mice bearing P388 cells were measured. The ester derivatives had a potent effect on the enzyme systems while the amide and phosphodiester derivatives were less active. The reactivity of ester derivatives was highly dependent on their chemical structure. The reactivity of amides and phosphodiester derivatives on mouse plasma and intestinal homogenate was also dependent on the chemical structure, although their action on intestinal enzymes was very similar. Two of eight ester derivatives showed considerable antitumor activity in vivo, although they also showed serious toxicity indicated by a weight loss in the mice. Four out of five amides and two out of three phosphodiesters showed antitumor activity, and two were highly effective (>200% in T/C, the ratio of the mean survival time of the treated group to that of the control group) with only a very slight weight loss.     

Unsaturated selenacrown ethers: synthesis, structure, and formation of silver complexes

The unsaturated selenacrown ethers, (Z,Z,Z,Z,Z)-1,4,7,10,13-pentaselenacyclopentadeca-2,5,8,11,14-pentaene (15-US-5) (2), (Z,Z,Z,Z,Z,Z)-1,4,7,10,13,16-hexaselenacyclooctadeca-2,5,8,11,14,17-hexaene (18-US-6) (3), (Z,Z,Z,Z,Z,Z,Z)-1,4,7,10,13,16,19-heptaselenacycloheneicosa-2,5,8,11,14,17,20-heptaene (21-US-7) (4), (Z,Z,Z,Z,Z,Z,Z,Z)-1,4,7,10,13,16,19,22-octaselenacyclotetracosa-2,5,8,11,14,17,20,23-octaene (24-US-8) (5), and (Z,Z,Z,Z,Z,Z,Z,Z,Z)-1,4,7,10,13,16,19,22,25-nonaselenacycloheptacosa-2,5,8,11,14,17,20,23,26-nonaene (27-US-9) (6), were obtained together with 1,4-diselenin (1) by reacting sodium selenide with cis-dichloroethene in the presence of a phase-transfer catalyst. The crystal structures of 2-5 were determined by X-ray crystallographic analysis. The UV spectra of the selenacrown ethers showed absorption maximums in the range of 251-262 nm, which were assigned to n-->pi transitions. The cyclic voltammograms indicated that the large unsaturated selenacrown ethers were oxidized more easily than the small ones. The thermal reactions of the unsaturated selenacrown ethers afforded 1,4-diselenin (1) along with polymeric materials, whereas 1 was thermally stable even at 100 degrees C. The reactions of 1 or unsaturated selenacrown ethers 2-5 with silver ion yielded various novel silver complexes, Ag(C(4)H(4)Se(2))(CF(3)COO) (7), Ag(C(4)H(4)Se(2))(2)(CF(3)COO) (8), Ag(15-US-5)(CF(3)COO) (9), Ag(5)(18-US-6)(3)(CF(3)COO)(5) (10), Ag(7)(21-US-7)(CF(3)COO)(5) (11), Ag(24-US-8)(2)(CF(3)COO) (12), Ag(2)(24-US-8)(CF(3)COO)(2) (13), Ag(3)(24-US-8)(2)(CF(3)COO)(3) (14), Ag(15-US-5)NO(3) (15), and Ag(21-US-7)BF(4) (16). The stoichiometry for the complexation with silver trifluoroacetate in solution was examined by (1)H NMR measurement. The titration plots of 2 and 5 under the dilution conditions showed a distinct inflection point at the 1/1 metal/macrocycle ratio, whereas the plots of 1 and 3 showed gradual change.     

Enhanced transdermal delivery of zidovudine in rats and human skin

Zidovudine (azidothymidine, AZT), a potent antiviral agent acting on acquired immunodeficiency syndrome virus, was examined with regard to permeation through rat and human skin. A steady state plasma concentration of AZT after transdermal application in rats estimated from both pharmacokinetics data after i.v. administration and penetration rate through excised rat skin from 10% oleic acid (OA) aqueous solution shows penetration about 85 times higher compared to that from 10% OA would be needed for therapeutic efficacy. A mixed-solvent system consisted of 5% Sefsol-318 (S-318), 10% OA, 10% N-methyl-2-pyrrolidone (MP), 20% propylene glycol (PG) and water showed promising characteristics as a vehicle in terms of permeability of AZT through excised rat skin. The maximum flux of 0.41 mumol/cm2/h was observed in excised human skin after application of a gel formulation including S-318, OA, MP and PG. The result suggests a possible use of the gel formulation to gain an effective plasma concentration in humans.     

Stimuli-sensitive core/shell template particles for immobilizing inorganic nanoparticles in the core

We synthesize and characterize stimuli-sensitive core/shell particles with functional group (or material) localized in the core. We previously reported two types of hybrid particles prepared by using the template particles which were synthesized by soap-free emulsion copolymerization with N-isopropylacrylamide and glycidyl methacrylate (GMA) as monomers but by different preparation methods. GMA has advantages in immobilizing materials having several functional groups such as thiol ones. In this study, to obtain the suitable template particles for immobilizing any inorganic nanoparticles in the core, we investigated the effect of feed ratio of the two monomers. Obtained template particles were modified by thiol compounds to introduce ionic groups. They were characterized by dynamic light scattering and scanning electron microscopy. After in situ synthesis of magnetic nanoparticles in the templates, the hybrid particles were characterized directly by transmission electron microscopy. Consequently, we could obtain the hybrid core/shell particles which contained a large amount of magnetic nanoparticles (∼33 wt%) in the core.     

Fabrication of novel molecular recognition membranes by physical adsorption and self-assembly for surface plasmon resonance detection of TNT

Recent concern on international terrorism and weapons of mass destruction demands the development of novel analytical methods for identification and quantification of explosive molecules. In this article, we describe the development of high-performance immunosensors for detection of 2,4,6-trinitrotoluene (TNT), a prime component of the landmines and bombs used by terrorist and military forces. The immunosensors were constructed by physical adsorption and self-assembly methods, and their binding interactions with a monoclonal anti-TNT antibody were evaluated for TNT detection using the surface plasmon resonance technique. A home-made 2,4,6-trinitrophenyl-keyhole limpet hemocyanine conjugate was used for physical adsorption. A poly(ethylene glycol) hydrazine hydrochloride thiolate was used in the construction of self-assembled monolayer surface and was immobilized with trinitrophenyl-β-alanine by the amide coupling method. The immunosensors were highly selective, regenerable, rapid, and exhibited remarkable sensitivity down to the parts-per-trillion level for TNT by the indirect competitive inhibition principle.     

Theoretical study of conformational transition of CDK4 by association of cyclin D3

ABSTRACT

We present coarse-grained simulations to investigate folding and association of cyclin-dependent kinase 4 (CDK4) with cyclin D3. In our simulations, the Gō-like model and our coarse-grained model are applied to describe intramolecular and intermolecular interaction of protein molecules, respectively. We investigate conformational stability of each state of CDK4 with/without association to cyclin D3 on a single basin potential with reference to each state of CDK4. The results of simulations for the native CDK4 with cyclin D3 are consistent with an experimental observation. The open CDK4 may associate to cyclin D3 on a different interface from cyclin D3-native CDK4 complex structure. If the open CDK4 associates to cyclin D3, the open CDK4 can slightly fold and become smaller, suggesting an unfolded intermediate. After a double-basin potential with reference to the native and open states of CDK4 is given, the open CDK4 associated with cyclin D3 can smoothly shift to the native CDK4. We propose a structure of a potential candidate of an unfolded intermediate during activation of CDK4.     

Numerical and experimental investigation of turbulent characteristics in a drag-reducing flow with surfactant additives

Cetyltrimethyl ammonium chloride (CTAC) surfactant additives, because of their long-life characteristics, can be used as promising drag-reducers in district heating and cooling systems. In the present study we performed both numerical and experimental tests for a 75 ppm CTAC surfactant drag-reducing channel flow. A two-component PIV system was used to measure the instantaneous streamwise and wall-normal velocity components. A Giesekus constitutive equation was adopted to model the extra stress due to the surfactant additives, with the constitutive parameters being determined by well-fitting apparent shear viscosities, as measured by an Advanced Rheometric Expansion System (ARES) rheometer. In the numerical study, we connected the realistic rheological properties with the drag-reduction rate. This is different from previous numerical studies in which the model parameters were set artificially. By performing consistent comparisons between numerical and experimental results, we have obtained an insight into the mechanism of the additive-induced drag-reduction phenomena.

Our simulation showed that the addition of surfactant additives introduces several changes in turbulent flow characteristics: (1) In the viscous sublayer, the mean velocity gradient becomes gentler due to the viscoelastic forces introduced by the additives. The buffer layer becomes expanded and the slope of the velocity profile in the logarithmic layer increases. (2) The locations where the streamwise velocity fluctuation and Reynolds shear stress attain their maximum value shifted from the wall region to the bulk flow region. (3) The root-mean-square velocity fluctuations in the wall-normal direction decrease for the drag-reducing flow. (4) The Reynolds shear stress decreases dramatically and the deficit of the Reynolds shear stress is mainly compensated by the viscoelastic shear stress. (5) The turbulent production becomes much smaller and its peak-value position moves toward the bulk flow region. All of these findings agree qualitatively with experimental measurements.

Regarding flow visualization, the violent streamwise vortices in the near wall region become dramatically suppressed, indicating that the additives weaken the ejection and sweeping motion, and thereby inhibit the generation of turbulence. The reduction in turbulence is accomplished by additive-introduced viscoelastic stress. Surfactant additives have dual effects on frictional drag: (1) introduce viscoelastic shear stress, which increases frictional drag; and (2) dampen the turbulent vortical structures, decrease the turbulent shear stress, and then decrease the frictional drag. Since the second effect is greater than the first one, drag-reduction occurs.     

Regularized logistic discrimination with basis expansions for the early detection of Alzheimer’s disease based on three-dimensional MRI data

In recent years, evidence has emerged indicating that magnetic resonance imaging (MRI) brain scans provide valuable diagnostic information about Alzheimer’s disease. It has been shown that MRI brain scans are capable of both diagnosing Alzheimer’s disease itself at an early stage and identifying people at risk of developing Alzheimer’s. In this article, we have investigated statistical methods for classifying Alzheimer’s disease patients based on three-dimensional MRI data via L2-type regularized logistic discrimination with basis expansions. Preceding studies adopted an open approach when applying three-dimensional data analysis. Our proposed classification model with dimension reduction techniques offers discriminant functions with excellent prediction performance in terms of sensitivity and specificity.