Structure of hydrated clusters of dibenzo-18-crown-6-ether in a supersonic jet--encapsulation of water molecules in the crown cavity

The structure of dibenzo-18-crown-6-ether (DB18C6) and its hydrated clusters has been investigated in a supersonic jet. Two conformers of bare DB18C6 and six hydrated clusters (DB18C6-(H(2)O)(n)) were identified by laser-induced fluorescence, fluorescence-detected UV-UV hole-burning and IR-UV double-resonance spectroscopy. The IR-UV double resonance spectra were compared with the IR spectra obtained by quantum chemical calculations at the B3LYP/6-31+G* level. The two conformers of bare DB18C6 are assigned to "boat" and "chair I" forms, respectively, among which the boat form is dominant. All the six DB18C6-(H(2)O)(n) clusters with n = 1-4 have a boat conformation in the DB18C6 part. The water molecules form a variety of hydration networks in the boat-DB18C6 cavity. In DB18C6-(H(2)O)(1), a water molecule forms the bidentate hydrogen bond with the O atoms adjacent to the benzene rings. In this cluster, the water molecule is preferentially hydrogen bonded from the bottom of boat-DB18C6. In the larger clusters, the hydration networks are developed on the basis of the DB18C6-(H(2)O)(1) cluster.     

Rhodium-catalyzed reaction of terminal alkynes with allylamine leading to (E)-3-alkylidene N-heterocycles

Terminal alkynes react with allylamine in the presence of a RhCl(PPh3)3 catalyst to give (E)-3-alkylidene-3,4-dihydro-2H-pyrroles. The products consist of two molecules of alkyne and one molecule of allylamine. Although dimers, trimers, and oligomers of alkynes are also obtained as byproducts, the addition of various ammonium salts to the reaction suppresses such oligomerization, resulting in an increase in product.     

Gerbils of a seizure-sensitive strain have a mitochondrial inner membrane protein with different isoelectric points from those of a seizure-resistant strain

The distribution of proteins in the cerebral cortex of a seizure-sensitive (SS) strain of gerbil and its seizure-resistant (SR) counterpart was profiled using two-dimensional gel electrophoresis. A series of proteins of similar molecular weight (around 83 kDa) showed small but consistent differences in their isoelectric point (pI) with indistinguishable profiles of distribution between the two strains. Amino acid sequences of peptides produced by limited proteolysis of each protein in the spots from the strains were identical or highly homologous to those of mitofilin, a mitochondrial inner membrane protein (IMMT) in humans. Analysis of cDNA sequences revealed the proteins of these spots to be gerbil mitofilin-like proteins (gIMMT), with a few base substitutions between SS and SR strains, in particular within a region near a putative transmembrane domain that is highly conserved in humans and gerbils. The amino acid at the site was acidic, Glu in humans and Asp in the strain SR of gerbil and a neutral, Asn in strain SS. In addition to these base substitutions, production of multiple species of mRNA for gIMMT by alternative splicing was observed.     

A chemical oscillator based on the photoreduction of 2-methyl-1,4-benzoquinone

This study investigated bromate-2-methyl-1,4-benzoquinone photoreaction in a batch reactor, in which the photoreduction of 2-methyl-1,4-benzoquinone plays a vital role in initiating and sustaining the reaction process. Transient oscillatory phenomena are observed over broad reaction conditions, but a phase diagram in the bromate and sulfuric acid concentration plane shows that the nonlinear behavior is more sensitive to the ratio of bromate and acid than their absolute concentrations. Light intensity and the photosensitive substance 2-methyl-1,4-benzoquinone exhibited opposite effects on the induction time of these oscillations, implying that illumination does more than just reduce 2-methyl-benzoquinone. The oscillatory behavior has been qualitatively reproduced with a generic model developed for bromate-aromatic compounds systems.     

In situ removal of carbon contamination from optics in a vacuum ultraviolet and soft X‐ray undulator beamline using oxygen activated by zeroth‐order synchrotron radiation

Carbon contamination of optics is a serious issue in all soft X‐ray beamlines because it decreases the quality of experimental data, such as near‐edge X‐ray absorption fine structure, resonant photoemission and resonant soft X‐ray emission spectra in the carbon K‐edge region. Here an in situ method involving the use of oxygen activated by zeroth‐order synchrotron radiation was used to clean the optics in a vacuum ultraviolet and soft X‐ray undulator beamline, BL‐13A at the Photon Factory in Tsukuba, Japan. The carbon contamination of the optics was removed by exposing them to oxygen at a pressure of 10^?1–10^?4 Pa for 17–20 h and simultaneously irradiating them with zeroth‐order synchrotron radiation. After the cleaning, the decrease in the photon intensity in the carbon K‐edge region reduced to 2–5%. The base pressure of the beamline recovered to 10^?7–10^?8 Pa in one day without baking. The beamline can be used without additional commissioning.     

Imidazole‐Aided Native Chemical Ligation: Imidazole as a One‐Pot Desulfurization‐Amenable Non‐Thiol‐Type Alternative to 4‐Mercaptophenylacetic Acid

Various bioactive proteins have been synthesized by native chemical ligation (NCL) and its combination with subsequent desulfurization (e.g., conversion from Cys to Ala). In NCL, excess 4‐mercaptophenylacetic acid (MPAA) is generally added to facilitate the reaction. However, co‐elution of MPAA with the ligation product during preparative high‐performance liquid chromatography sometimes reduces its usefulness. In addition, contamination of MPAA disturbs subsequent desulfurization. Here, we report for the first time that imidazole can be adopted as an alternative to MPAA in NCL using a peptide‐alkylthioester. The efficiency of the imidazole‐aided NCL (Im‐NCL) is similar to that of traditional MPAA‐aided NCL. As model cases, we successfully synthesized adiponectin(19‐107) and [Ser(PO₃H₂)⁶⁵]‐ubiquitin using Im‐NCL with a one‐pot desulfurization.     

Quark confinement physics from quantum chromodynamics

We show the construction of the dual superconducting theory for the confinement mechanism from QCD in the maximally abelian (MA) gauge using the lattice QCD Monte Carlo simulation. We find that essence of infrared abelian dominance is naturally understood with the off-diagonal gluon mass m_off ≈- 1.2GeV induced by the MA gauge fixing. In the MA gauge, the off-diagonal gluon amplitude is forced to be small, and the off-diagonal gluon phase tends to be random. As the mathematical origin of abelian dominance for confinement, we demonstrate that the strong randomness of the off-diagonal gluon phase leads to abelian dominance for the string tension. In the MA gauge, there appears the macroscopic network of the monopole world-line covering the whole system. We investigate the monopole-current system in the MA gauge by analyzing the dual gluon field B_μ. We evaluate the dual gluon mas as m_B = 0.4 0.5GeV in the infrared region, which is the lattice-QCD evidence of the dual Higgs mechanism by monopole condensation. Owing to infrared abelian dominance and infrared monopole condensation, QCD in the MA gauge is describable with the dual Ginzburg-Landau theory.     

Influence of DC external magnetic field on AC transport current loss of HTS tape

We measured the AC transport current loss of Bi 2223 multifilament Ag-sheathed tape under DC external magnetic field of 0–0.2 T. There were discrepancies between the measured data and Norris' formula for elliptical model in the range of low value of I_p/I_c (I_p and I_c are peak of the AC transport current and critical current of the tape respectively), while without DC background field, the loss of the tape was close to Norris' formula. Theoretically speaking, even with the DC background field and decreased critical current the AC transport current loss of the tape follows Norris' formula which is derived from the Bean model. When DC background field is applied to the HTS tape, n value of the power law E–J characteristics decreases together with the decrease of J_c. Dependence of the AC transport current loss on the n value was analyzed by numerical calculation. The results show that the loss depends on the n value and that decrease of the n value is one of the causes of the discrepancies between the measured data and Norris' formula.     

Nickel-catalyzed chelation-assisted transformations involving ortho C-H bond activation: regioselective oxidative cycloaddition of aromatic amides to alkynes

Although the pioneering example of ortho metalation involving cleavage of C-H bonds was achieved using a nickel complex (Kleiman, J. P.; Dubeck, M. J. Am. Chem. Soc. 1963, 85, 1544), no examples of catalysis using nickel complexes have been reported. In this work, the Ni-catalyzed transformation of ortho C-H bonds utilizing chelation assistance, such as oxidative cycloaddition of aromatic amides with alkynes, has been achieved.