Modeling Thioredoxin Reductase-Like Activity with Cyclic Selenenyl Sulfides: Participation of an NH⋅⋅⋅Se Hydrogen Bond through Stabilization of the Mixed Se−S Intermediate

At the redox-active center of thioredoxin reductase (TrxR), a selenenyl sulfide (Se−S) bond is formed between Cys497 and Sec498, which is activated into the thiolselenolate state ([SH,Se⁻]) by reacting with a nearby dithiol motif ([SH^Cys59,SH^Cys64]) present in the other subunit. This process is achieved through two reversible steps: an attack of a cysteinyl thiol of Cys59 at the Se atom of the Se−S bond and a subsequent attack of a remaining thiol at the S atom of the generated mixed Se−S intermediate. However, it is not clear how the kinetically unfavorable second step progresses smoothly in the catalytic cycle. A model study that used synthetic selenenyl sulfides, which mimic the active site structure of human TrxR comprising Cys497, Sec498, and His472, suggested that His472 can play a key role by forming a hydrogen bond with the Se atom of the mixed Se−S intermediate to facilitate the second step. In addition, the selenenyl sulfides exhibited a defensive ability against H₂O₂-induced oxidative stress in cultured cells, which suggests the possibility for medicinal applications to control the redox balance in cells.     

Simulating bubble dynamics in a buoyant system

Multiphase flows are critical components of many physical systems; however, numerical models of multiphase flows with large parameter gradients can be challenging. Here, two different numerical methods, volume of fluid (VOF) and smoothed particle hydrodynamics (SPH), are used to model the buoyant rise of isolated gas bubbles through quiescent fluids for a range of Bond and Reynolds numbers. The VOF is an Eulerian grid–based method, whereas the SPH is Lagrangian and mesh free. Each method has unique strengths and weaknesses, and a comparison of the two approaches as applied to multiphase phenomena has not previously been performed. The VOF and SPH simulations are compared, verified, and validated. Results using two-dimensional VOF and SPH simulations are similar to each other and are able to reproduce numerical benchmarks and experimental results for sufficiently large Morton and Reynolds numbers. It is also shown that at low Reynolds numbers, the two methods, SPH and VOF, diverge in the transient regime of the bubble rise. Regimes that require simulations capable of representing three-dimensional drag are identified as well as regimes in which results from VOF and SPH diverge.     

Practical separation of silicon isotopes by IRMPD of Si2F6

Large-scale silicon isotope separation based on the IRMPD of natural Si₂F₆ has been carried out using a commercially available high power CO₂ TEA laser and a flow reaction system. The decomposition product SiF₄ containing 19–33% of ³⁰Si was obtained at a production rate of 1.5×10^–2–2.6×10^–2 mol·h^–1, depending on experimental parameters such as laser wavelength, laser fluence, pressure, and flow rate. SiF₄ containing 12% of ²⁹Si was obtained under slightly different conditions, i.e., at a shorter wavelength than that for ³⁰Si. When 39% of Si₂F₆ was decomposed at a slow flow rate, residual Si₂F₆ was found to have 99.7% of ²⁸Si. The production rate was 4.2×10^–2 mol·h^–1.     

New many body perturbation method and the Hubbard model

By adapting the functional derivative method developed by Kadanoff and Baym to the Hubbard model, a new perturbation method is formulated. The unperturbed state is defined by the two equations which yield Hubbard's results, while the remainder is given by functional derivatives of the Green's functions which are shown to generate a complete perturbation series. Advantages of this method are discussed.     

First-stage enrichment in CO2-laser-induced13C separation by a two-stage IRMPD process: IRMPD of CHClF2/Br2 mixtures

We have been studying the practical CO₂-laser-induced¹³C separation by a two-stage IRMPD process. The IRMPD of natural CHClF₂ in the presence of Br₂ mainly produced CBr₂F₂, which was found to be highly enriched with¹³C. The yield and¹³C-atom fraction of CBr₂F₂ were examined as functions of pulse number, laser line, laser fluence, total pressure, and Br₂ pressure using a CO₂ TEA laser with an output less than 1 J pulse^–1 in order to optimize experimental conditions for¹³C separation. For example, we obtained CBr₂F₂ at a¹³C concentration of 55% in the irradiation of the mixture of 100-Torr CHClF₂ and 10-Torr Br₂ with the laser radiation at a wavenumber of 1045.02 cm^–1 and at a fluence of 3.4 J cm^–2. The mechanism for the IRMPD is discussed on the basis of observed results. Using 8-J pulses, we were able to obtain 1.9×10^–4 g of¹³C-enriched CBr₂F₂ (¹³C-atom fraction, 47%) per pulse under selected conditions. It is possible to produce 90% or higher¹³C by the second-stage IRMPD of the CBr₂F₂ in the presence of oxygen.     

Universal dynamics behavior in superionic conducting glasses

The inelastic neutron scattering experiment on superionic glass system AgI-AgPO₃ have been performed in the energy and momentum transfer range from ? 5 to 15 meV and 0 to 8 Å^? 1, respectively by using a time of flight MARI instrument at Rutherford Appleton Laboratory, ISIS, UK. The E-dependence of the inelastic data show an excess intensity at low energy around 3 meV, the so-called Boson peak, which increased with the dopant salt. The Q-dependence of the elastic scattering reveals a prepeak at anomalously low Q value around 0.8 Å^? 1, which is not observed in the undoped AgPO₃ glass. The Q-dependence in the energy region from 1 to 3 meV shows clearly an excess intensity at Q ~ 2.2 Å ^? 1compared with the undoped AgPO₃. All these features correlate with the increasing mobility of Ag⁺ ions due to the expansion of the network structure caused by salt doping, which leads to the increase of ionic conductivity. Similar results have also been observed in the corresponding superionic glass system AgI-Ag₂S-AgPO₃ that was observed by both MARI and NEAT instrument at HMI, Berlin. The results show a universal dynamic behavior in silver phosphate glasses.     

Improvement in flow-sheet of extraction chromatography for trivalent minor actinides recovery

Journal of Radioanalytical and Nuclear Chemistry - Extraction chromatography flow-sheet employing octyl(phenyl)-N,N-diisobutylcarbonoylmethylphosphine oxide and bis(2-ethylhexyl) hydrogen phosphate...     

Rational Design and Identification of a Non‐Peptidic Aggregation Inhibitor of Amyloid‐β Based on a Pharmacophore Motif Obtained from cyclo[‐Lys‐Leu‐Val‐Phe‐Phe‐]

Inhibition of pathogenic protein aggregation may be an important and straightforward therapeutic strategy for curing amyloid diseases. Small‐molecule aggregation inhibitors of Alzheimer’s amyloid‐β (Aβ) are extremely scarce, however, and are mainly restricted to dye‐ and polyphenol‐type compounds that lack drug‐likeness. Based on the structure‐activity relationship of cyclic Aβ16–20 (cyclo‐[KLVFF]), we identified unique pharmacophore motifs comprising side‐chains of Leu², Val³, Phe⁴, and Phe⁵ residues without involvement of the backbone amide bonds to inhibit Aβ aggregation. This finding allowed us to design non‐peptidic, small‐molecule aggregation inhibitors that possess potent activity. These molecules are the first successful non‐peptidic, small‐molecule aggregation inhibitors of amyloids based on rational molecular design.     

A series of luminescent Cu(I) mixed-ligand complexes containing 2,9-dimethyl-1,10-phenanthroline and simple diphosphine ligands

A series of Cu(I) mixed-ligand complexes containing dmp (2,9-dimethyl-1,10-phenanthroline) and one of simple diphosphine ligands (Ph2P(CH2)nPPh2) were prepared. Among the complexes, [Cu(dppp)(dmp)]PF6 (n=3) and [Cu2(dppb)2(dmp)2](PF6)2 (n=4) were characterized by X-ray structure analyses. The dppp complex has been characterized as a mononuclear complex, while [Cu2(dppb)2(dmp)2]2+ exists as a dinuclear complex in which two dppb ligands bridge between the two Cu(I) atoms. Although the distorted tetrahedral structures around the central metals of the two complexes are similar, the P-Cu-P angles are different between the two complexes. All of the series of complexes show photoluminescence in solution, and the intensity of the luminescence increases with n (n=2-4). The non-radiative rate constants of the complexes decrease markedly with n although radiative rate constants of the complexes are similar.     

In situ transmission electron microscopy observation of the growth of bismuth oxide whiskers.

Growth of bismuth oxide (most probably Bi2O3) was observed in situ in a transmission electron microscope. Bi liquid particles were dispersed on the substrates of diamond or SiO2. Introduction of oxygen up to 5 x 10-4 Pa resulted in formation of bismuth oxide (most probably Bi2O3) whiskers. The growth mechanism of the whisker was discussed in terms of a vapor-liquid-solid (VLS) mechanism. It is suggested that the liquid droplet of Bi acts as a physical catalyst for growth of bismuth oxide (most probably Bi2O3) whiskers.