Quantum mechanical/molecular mechanical studies on spectral tuning mechanisms of visual pigments and other photoactive proteins

The protein environments surrounding the retinal tune electronic absorption maximum from 350 to 630 nm. Hybrid quantum mechanical/molecular mechanical (QM/MM) methods can be used in calculating excitation energies of retinal in its native protein environments and in studying the molecular basis of spectral tuning. We hereby review recent QM/MM results on the phototransduction of bovine rhodopsin, bacteriorhodopsin, sensory rhodopsin II, nonretinal photoactive yellow protein and their mutants.     

Stable and lipophilic technetium-99m dithiosemicarbazone complexes with 5-6-5 membered chelate ring structure

Modification of the chelate ring structure of technetium-99m (99mTc) dithiosemicarbazone (DTS) chelate was carried out in pursuit of a more stable and lipophilic compound. A new DTS chelating molecule, pentane-2,4-dione bis(N-methylthiosemicarbazone) (PETS), with a 5-6-5 membered chelate ring structure, was synthesized and labeled with 99mTc, PETS generated two 99mTc compounds as major products. Both had much higher stability and lipophilicity than a 5-5-5 membered 99mTc DTS compound, as well as great stability in plasma. Both 99mTc-PETS compounds were rapidly extracted by the brain and heart when injected into mice. Thus, the modified chelate ring structure afforded a preferable characteristics to DTS chelate as for the chelating site for technetium radiopharmaceuticals.     

Inductive effect-assisted chain-growth polycondensation. synthetic development from para- to meta-substituted aromatic polyamides with low polydispersities

The polycondensation of m-(octylamino)benzoic acid esters (1) with base was investigated in order to extend the synthesis of well-defined condensation polymers from para-substituted polymers to meta-substituted ones. We expected that the aminyl anion of 2 would deactivate the ester moiety at the meta position of 2 owing to the strong inductive effect of the anion, resulting in, not self-polycondensation, but chain-growth polycondensation. The methyl ester monomer 1a polymerized with lithium hexamethyldisilazide (LiHMDS) in the presence of phenyl benzoate (3a) as an initiator at 0 degrees C to afford a polymer with a low polydispersity, but the product contained a small amount of self-condensation polymer. On the other hand, the polymerization of the ethyl ester monomer (1b) with phenyl 4-methylbenzoate (3b) proceeded through chain polymerization without self-polycondensation. The Mn values of the polymers increased linearly in proportion to the [1b]0/[3b]0 ratio, and the Mw/Mn ratios remained narrow over the entire [1b]0/[3b]0 range. Furthermore, a block copolymer of N-alkylated poly(m-benzamide) and poly(p-benzamide) with a low polydispersity was synthesized by the monomer addition method under this polymerization condition.     

Measuring method of longitudinally detected ESR signal intensities against resonant frequencies at 250 to 950 MHz in a constant microwave field

Signal intensities of longitudinally detected ESR (LODESR) of 1,1-diphenyl-2-picrylhydrazyl powder were precisely measured at 250 to 950 MHz under a constant magnetic field microwave that was applied using a single-turn coil. The LODESR signal intensity was reduced linearly due to smaller Zeeman splitting. Because the noise level was constant, the sensitivity of LODESR was approximately proportional to the resonant frequency. As far as we know, this study represents the first attempt to measure precisely the relationship between the signal intensities and resonant frequencies of ESR in an experimental condition.     

Coarse and Fine Control of the EPR Frequency of a Loop-Gap Resonator Using a Single-Turn Coil with a Varactor Diode Attached

Coarse control and fine control of the resonant frequency of a loop-gap resonator (LGR) operating at an electron paramagnetic resonance (EPR) frequency of ca. 650 MHz were achieved using a single-turn coil with a varactor diode attached (a frequency shift coil). When the distance between the LGR and the frequency shift coil was changed from 15 to 10 mm under the condition of constant voltage to the varactor diode (0 V), a shift of the resonant frequency of the LGR of ca. 20 MHz was observed (coarse frequency control). When the voltage applied to the varactor diode was changed from 0 to 15 V at the same distance between the LGR and the frequency shift coil (10 mm), a shift of the resonant frequency of the LGR of ca. 200 kHz was observed (fine frequency control). There were no significant changes in sensitivity of EPR measurements of a phantom (comprised of agar with a nitroxide radical and physiological saline solution) without and with the frequency shift coil. The EPR sensitivity did not change discernibly when the resonant frequency was shifted by the frequency shift coil. Furthermore, radio-frequency phase adjustment for homodyne detection could be performed by using the frequency shift coil without applying frequency modulation to the carrier wave.     

PVTx relationships and solid-liquid equilibria for the m-xylene-p-xylene system under high pressures

PVTx relationships of the m-xylene-p-xylene system have been measured with a glass piezometer at 283.15 and 298.15 K and pressures up to 200 MPa, or up to the point of solidification of m-xylene where this occurred at a lower pressure. Freezing pressures of m-xylene were observed as a discontinuity in the volume at increasing pressure. Approximate solid-liquid equilibria under high pressures were obtained from the freezing pressure measurement. The Carnahan-Starling-van der Waals (CS-vdW) equation of state was used to correlate the PVTx data. The solid-liquid equilibria under high pressures were calculated with the CS-vdW equation of state for the liquid phase and a simple equation of state for the solid phase. In order to test the validity of the calculation method, the solid-liquid equilibrium relationships of the benzene-cyclohexane system were also calculated. It was found that the solid molar volume should be treated as a function of temperature and/or pressure to fit the experimental data.     

Discussion of substantially identical gel points among multiallyl monomers based on characterization of resultant network polymer precursors consisting of oligomeric primary polymer chains

No difference in the actual gel points was substantially observed among three isomeric diallyl phthalates such as diallyl phthalate (DAP), diallyl isophthalate, and diallyl terephthalate (DAT); this interesting gelation behavior was discussed further in terms of the correlation between gelation and the difference in cyclization modes, and also, the difference in reactivity between the uncyclized and cyclized radicals for cross‐linking. In the present work, we tried to extend the preceding discussion to the polymerization of triallyl trimellitate (TAT) because the molecular structure of TAT is presumed to essentially involve the characteristics of three isomeric diallyl phthalates and, therefore, the enhanced gelation was expected in TAT polymerization. However, no enhancement of gelation was observed. For a full understanding of the gelation in multiallyl cross‐linking polymerization, we explored further the polymerizations of DAP, DAT, and TAT, especially focusing on the characterization of resultant network polymer precursors (NPPs) using SEC‐MALLS‐viscometry providing the correlation of [η] versus M_w of fractionated samples. Notably, the structure of NPP consisting of oligomeric primary polymer chains generated from specific allyl polymerization would become core‐shell type dendritic with the progress of polymerization. The correlation between delayed gelation and decreased reactivity of dendritic NPP for intermolecular cross‐linking is discussed. Conclusively, the reactivity for intermolecular cross‐linking between NPPs decreased with the progress of polymerization leading to a delayed gelation. © 2009 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 47: 2871–2881, 2009     

Direct electron transfer with glucose oxidase immobilized in an electropolymerized poly( N-methylpyrrole) film on a gold microelectrode

Direct electron transfer between active glucose oxidase (GOD) and a gold electrode was obtained when GOD was immobilized in poly(N-methylpyrrole) electrochemically prepared on the gold electrode. When electropolymerization was accomplished at 50 °C, after glucose addition, the cyclic voltammograms showed an increased oxidation peak at ca. ?0.45 V vs. Ag/AgCl. This potential corresponds to the oxidation potential for FADH₂. Although the GOD becomes much less selective, a glucose-dependent current response is obtained.