Insights into the Allosteric Effect of SENP1 Q597A Mutation on the Hydrolytic Reaction of SUMO1 via an Integrated Computational Study

Small ubiquitin-related modifier (SUMO)-specific protease 1 (SENP1) is a cysteine protease that catalyzes the cleavage of the C-terminus of SUMO1 for the processing of SUMO precursors and deSUMOylation of target proteins. SENP1 is considered to be a promising target for the treatment of hepatocellular carcinoma (HCC) and prostate cancer. SENP1 Gln597 is located at the unstructured loop connecting the helices α4 to α5. The Q597A mutation of SENP1 allosterically disrupts the hydrolytic reaction of SUMO1 through an unknown mechanism. Here, extensive multiple replicates of microsecond molecular dynamics (MD) simulations, coupled with principal component analysis, dynamic cross-correlation analysis, community network analysis, and binding free energy calculations, were performed to elucidate the detailed mechanism. Our MD simulations showed that the Q597A mutation induced marked dynamic conformational changes in SENP1, especially in the unstructured loop connecting the helices α4 to α5 which the mutation site occupies. Moreover, the Q597A mutation caused conformational changes to catalytic Cys603 and His533 at the active site, which might impair the catalytic activity of SENP1 in processing SUMO1. Moreover, binding free energy calculations revealed that the Q597A mutation had a minor effect on the binding affinity of SUMO1 to SENP1. Together, these results may broaden our understanding of the allosteric modulation of the SENP1−SUMO1 complex.     

A MALDI-MS sensing chip prepared by non-covalent assembly for quantitation of acid phosphatase

A novel sensing chip was designed for MALDI-MS quantitation of acid phosphatase(ACP).The ACP sensing chip was constructed through non-covalent interaction of streptavidin and biotin for the assembly of biotinylated peptide substrate on biotinylated polyethylene-glycol(PEG)modified indium-tin oxide(ITO)slide.In the presence of ACP,the peptide substrate was dephosphorylated under acidic condition to generate a new mass signal.The quantitative assay of ACP was achieved with the mass signal ratio of product to the sum of product and left peptide substrate.Under optimal detection conditions,the ratio was linearly correlated with the concentration of ACP in the range of 0.05–12 g/L with a detection limit(LOD)of 0.04 g/L.The designed ACP sensing chip has been used to analyze ACP in complex clinical samples,which exhibited high selectivity,good repeatability,and admirably anti-interference ability.This work further demonstrates the concept of MS sensing and the application of MALDI-MS in quantitative analysis,and provides a convenient method for the quantitation of proteases in clinical diagnosis.     

AlxGa1−xAs LPE growth

Al_xGa_1−xAs LPE growth was studied within the temperature range of 930–900°C with Al concentrations in solutions from 0.04 to 2.4 at.%. AlAs concentration in layers has been shown to grow with the cooling rate increase of solution. Interface and volume nucleation parameter dependence of K_i and K_v and formation time t_f on Al concentration in Ga solution have been found. Addition of Al to Ga solution increases critical values of As supersaturation (supercooling) and, as a result, increase in thickness of Al_xGa_1−xAs layers compared with GaAs layers have been determined in spite of As concentration lowering in Ga solution.     

Insight into the combustion mechanism of nitroglycerin/nano-aluminum composite materials

Structural Chemistry - The ReaxFF-lg is used to simulate the thermal decomposition of the pure nitroglycerin (NG) and nitroglycerin/nano-Al (NG/Al) systems. The simulation results show that the...     

Kobalt und Nickel

Ohne Zusammenfassung     

KIT-6负载CeO2催化CO2和甲醇合成碳酸二甲酯

采用不同老化温度(80、100、120和150℃)合成了一系列KIT-6载体,并通过浸渍法制备了相应的CeO_2/KIT-6催化剂。结合X射线衍射、N_2物理吸附、NH_3程序升温脱附、CO_2程序升温脱附、透射电子显微镜、傅里叶变换红外光谱和X射线光电子能谱等表征结果,详细考察了老化温度对KIT-6结构以及CeO_2/KIT-6催化剂直接催化CO_2和甲醇合成碳酸二甲酯(DMC)反应活性的影响。结果表明,不同老化温度下制备的KIT-6均保持其独特的三维孔道结构。随着老化温度升高,KIT-6比表面积先增大后减小,当老化温度为100℃时,KIT-6比表面积达到最大(683 m~2·g~(-1))。KIT-6较高的比表面积有利于提高CeO_2分散度,进而提高暴露的活性位点数量,催化活性随催化剂表面中等碱/酸性吸附位数量和Ce~(3+)含量的增加而逐渐提高。其中,CeO_2/100-KIT-6催化剂中CeO_2颗粒尺寸最小(5.9 nm),暴露的活性位数量最高,催化活性最佳。随后,考察了反应温度和压力对CeO_2/100-KIT-6催化活性的影响。随着反应温度提高,催化活性先升高后降低,当反应温度为140℃时,催化活性最高;且催化活性随反应压力的提高而逐渐增加。在反应温度为140℃、压力为6.8 MPa条件下,催化剂经6次循环后,DMC收率由15 mmol·g_(CeO_2)~(-1)逐渐降低至2.8 mmol·g_(CeO_2)~(-1),原因归结为反应过程中CeO_2纳米颗粒发生团聚,使暴露出的活性位数量减少。     

Mixing of Racemic Poly(L-lactide)/Poly(D-lactide) Blend with Miscible Poly(D,L-lactide):Toward All Stereocomplex-type Polylactide with Strikingly Enhanced SC Crystallizability

Stereocomplex-type polylactide (SC-PLA) consisting of alternatively arranged poly(L-lactide) (PLLA) and poly(D-lactide) (PDLA) chains has gained a good reputation as a sustainable engineering plastic with outstanding heat resistance and durability,however its practical applications have been considerably hindered by the weak SC crystallizability.Current methods used to enhance the SC crystallizability are generally achieved at the expense of the precious bio-renewability and/or bio-degradability of PLAs.Herein,we demonstrate a feasible method to address these challenges by incorporating small amounts of poly(D,L-lactide) (PDLLA) into linear high-molecular-weight PLLA/PDLA blends.The results show that the incorporation of the atactic PDLLA leads to a significant enhancement in the SC crystallizability because its good miscibility with the isotactic PLAs makes it possible to greatly improve the chain mixing between PLLA and PDLA as an effective compatibilizer.Meanwhile,the melt stability (i.e.,the stability of PLLA/PDLA chain assemblies upon melting) could also be improved substantially.Very intriguingly,SC crystallites are predominantly formed with increasing content and molecular weight of PDLLA.More notably,exclusive SC crystallization can be obtained in the racemic blends with 20 wt％ PDLLA having weight-average molecular weight of above 1 ×10s g/mol,where the chain mixing level and intermolecular interactions between the PLA enantiomers could be strikingly enhanced.Overall,our work could not only open a promising horizon for the development of all SC-PLA-based engineering plastic with exceptional SC crystallizability but also give a fundamental insight into the crucial role of PDLLA in improving the SC crystallizability of PLLA/PDLA blends.     

Positively charged liposomes consisting of the KTTKS pentapeptide conjugated with rhodamine increase rhodamine toxicity in E. coli and zebrafish embryo

Liposomes composed of cell‐penetrating peptide derivatives increased transport across the cell membrane. Conjugating rhodamine to a cell‐penetrating peptide increased the toxicity of rhodamine in E. coli and zebrafish embryos. A similar total protein inhibition pattern with different intensities, indicating that the interaction pathways of the rho‐KTTKS‐CONH₂ monomer and liposomes were the same. It suggests that the rho‐KTTKS‐CONH₂ liposomes showed higher toxicity because better transport across the cell membrane increased the effective concentration inside cells. The staining of zebrafish embryos using rho‐KTTKS‐CONH₂ liposomes showed a longer retention time, suggesting that it can penetrate deeper tissues or organs in zebrafish.     

Polyesters containing ring units in main chains. I. Preparation and stereochemistry of monomers and polyesters

Cycloalkanone (C₅–C₈, C₁₂, and C₁₅) or cycloalkane (C₅ and C₆) ring-containing monomeric diesters and the polyesters derived from them were prepared, and their configurations were studied by ¹³C-NMR spectroscopy. Absolute configurations were determined for ring sizes 5, 6, and 7. Configurational change during reduction of a ketonic group of monomeric diesters with ring sizes 5 and 6 was discussed in terms of the steric effect of ring substituents on the ketonic group. In the polycondensation reaction epimerization of the ring units was observed in 5-, 6-, and 7-membered cycloalkanones and not in others, which is explained by steric hindrance by the ring substituents against attack of tetrabutyl titanate catalyst on the ketonic group.