Heat rectification in molecular junctions

Heat conduction through molecular chains connecting two reservoirs at different temperatures can be asymmetric for forward and reversed temperature biases. Based on analytically solvable models and on numerical simulations we show that molecules rectify heat when two conditions are satisfied simultaneously: the interactions governing the heat conduction are nonlinear, and the junction has some structural asymmetry. We consider several simplified models where a two-level system (TLS) simulates a highly anharmonic vibrational mode, and asymmetry is introduced either through different coupling of the molecule to the contacts, or by considering internal molecular asymmetry. In the first case, we present analytical results for the asymmetric heat current flowing through a single anharmonic mode using different forms for the TLS-reservoirs coupling. We also demonstrate numerically, studying a realistic molecular model, that a uniform anharmonic molecular chain connecting asymmetrically two thermal reservoirs rectifies heat. This effect is stronger for longer chains, where nonlinear interactions dominate the transfer process. When asymmetry is related to the internal level structure of the molecule, numerical simulations reveal a nontrivial rectification behavior. We could still explain this behavior in terms of an effective system-bath coupling. Our study suggests that heat rectification is a fundamental characteristic of asymmetric nonlinear thermal conductors. This phenomenon is important for heat control in nanodevices and for understanding of energy flow in biomolecules.     

Theory of activated rate processes: Coupled modes

The thermally activated escape rate of a classical particle out of a potential well is studied in a simple model which includes coupling between the escape (reactive) coordinate and another coordinate. The main effect of the non-reactive coordinate is to open a new (non-markovian) channel between the reactive coordinate and the thermal bath.     

Spectroscopic,electrochemical, and structural aspects of the Ce(IV)/Ce(III) DOTA redox couple chemistry in aqueous solutions

The redox potential of the Ce(IV)/Ce(III) DOTA is determined to be 0.65 V versus SCE, pointing out a stabilization of ~13 orders of magnitude for the Ce(IV)DOTA complex, as compared to Ce(IV)_aq. The Ce(III)DOTA after electrochemical oxidation yields a Ce(IV)DOTA complex with a t_1/2 ~3 h and which is suggested to retain the “in cage” geometry. Chemical oxidation of Ce(III)DOTA by diperoxosulfate renders a similar Ce(IV)DOTA complex with the same t_1/2. From the electrochemical measurements, one calculates logK (Ce(IV)DOTA^2?) ~ 35.9. Surprisingly, when Ce(IV)DOTA is obtained by mixing Ce(IV)_aq with DOTA, a different species is obtained with a 2 : 1(M : L) stoichiometry. This new complex, Ce(IV)DOTACe(IV), shows redox and spectroscopic features which are different from the electrochemically prepared Ce(IV)DOTA. When one uses thiosulfate as a reducing agent of Ce(IV)DOTACe(IV), one gets a prolonged lifetime of the latter. The reductant seems to serve primarily as a coordinating ligand with a geometry which does not facilitate inner sphere electron transfer. The reduction process rate in this case could be dictated by an outer sphere electron transfer or DOTA exchange by S₂O₃^2?. Both Ce(IV)DOTA and Ce(IV)DOTACe(IV) have similar kinetic stability and presumably decompose via decarboxylation of the polyaminocarboxylate ligand.     

On the Aqueous Chemistry of the UIV–DOTA Complex

The 1,4,7,10-tetrazacyclodecane-1,4,7,10-tetraacetic acid (DOTA) aqueous complex of U^IV with H₂O, OH⁻, and F⁻ as axial ligands was studied by using UV/Vis spectrophotometry, ESI-MS, NMR spectroscopy, X-ray crystallography, and electrochemistry. The U^IV–DOTA complex with either water or fluoride as axial ligands was found to be inert to oxidation by molecular oxygen, whereas the complex with hydroxide as an axial ligand slowly hydrolyzed and was oxidized by dioxygen to a diuranate precipitate. The combined data set acquired shows that, although axial substitution of fluoride and hydroxide ligands instead of water does not seem to significantly change the aqueous DOTA complex structure, it has an important effect on the electronic configuration of the complex. The U^IV/U^III redox couple was found to be quasi-reversible for the complex with both axially bonded H₂O and hydroxide, but irreversible for the complex with axially bonded fluoride. Intriguingly, binding of the axial fluoride renders the irreversible one-electron U^V/U^IV oxidation of the [U^IV(DOTA)(H₂O)] complex quasi-reversible, which suggests the formation of the short-lived pentavalent form of the complex, an aqueous non-uranyl chelated U^V cation.     

pyAIR—A New Software Tool for Breathomics Applications—Searching for Markers in TD-GC-HRMS Analysis

Volatile metabolites in exhaled air have promising potential as diagnostic biomarkers. However, the combination of low mass, similar chemical composition, and low concentrations introduces the challenge of sorting the data to identify markers of value. In this paper, we report the development of pyAIR, a software tool for searching for volatile organic compounds (VOCs) markers in multi-group datasets, tailored for Thermal-Desorption Gas-Chromatography High Resolution Mass-Spectrometry (TD-GC-HRMS) output. pyAIR aligns the compounds between samples by spectral similarity coupled with retention times (RT), and statistically compares the groups for compounds that differ by intensity. This workflow was successfully tested and evaluated on gaseous samples spiked with 27 model VOCs at six concentrations, divided into three groups, down to 0.3 nL/L. All analytes were correctly detected and aligned. More than 80% were found to be significant markers with a p-value < 0.05; several were classified as possibly significant markers (p-value < 0.1), while a few were removed due to background level. In all group comparisons, low rates of false markers were found. These results showed the potential of pyAIR in the field of trace-level breathomics, with the capability to differentially examine several groups, such as stages of illness.     

Fast analysis of drugs in a single hair

A new method for the fast screening of cocaine and 6-monoacetylmorphine (6-MAM) in a single hair, using gas chromatography/mass spectrometry (GC/MS), is described. The analyses are conducted in less than 10 min with minimal sample preparation. The novel method combines the ChromatoProbe direct sample introduction device for intrainjector thermal extraction, fast GC separation, a supersonic molecular beam GC/MS interface and hyperthermal surface ionization (HSI). The technique has been successfully employed for the detection of cocaine in as little as a 1-mm section of hair using selected ion monitoring (SIM). Unambiguous full scan mass spectra of cocaine and 6-MAM were obtained on a single hair for cocaine and heroin users, respectively. HSI was found to be almost 3 orders of magnitude more selective than electron impact ionization for cocaine compared with the major hair constituents, with a minimum detected concentration of approximately 10 ppb in the SIM mode. Results obtained for 12 drug users showed full qualitative agreement with similar results using rigorous solvent extraction followed by electrospray-liquid chromatography/mass spectrometry analysis. However, quantitative studies showed only partial agreement. No false positives were observed for 10 drug free subjects. This method enables fast drug monitoring along the hair length which permits time correlation studies.     

Chemical oxidation of a redox-active, ferrocene-containing cationic lipid: Influence on interactions with DNA and characterization in the context of cell transfection

We report an approach to the chemical oxidation of a ferrocene-containing cationic lipid [bis(11-ferrocenylundecyl)dimethylammonium bromide, BFDMA] that provides redox-based control over the delivery of DNA to cells. We demonstrate that BFDMA can be oxidized rapidly and quantitatively by treatment with Fe(III)sulfate. This chemical approach, while offering practical advantages compared to electrochemical methods used in past studies, was found to yield BFDMA/DNA lipoplexes that behave differently in the context of cell transfection from lipoplexes formed using electrochemically oxidized BFDMA. Specifically, while lipoplexes of the latter do not transfect cells efficiently, lipoplexes of chemically oxidized BFDMA promoted high levels of transgene expression (similar to levels promoted by reduced BFDMA). Characterization by SANS and cryo-TEM revealed lipoplexes of chemically and electrochemically oxidized BFDMA to both have amorphous nanostructures, but these lipoplexes differed significantly in size and zeta potential. Our results suggest that differences in zeta potential arise from the presence of residual Fe²⁺ and Fe³⁺ ions in samples of chemically oxidized BFDMA. Addition of the iron chelating agent EDTA to solutions of chemically oxidized BFDMA produced samples functionally similar to electrochemically oxidized BFDMA. These EDTA-treated samples could also be chemically reduced by treatment with ascorbic acid to produce samples of reduced BFDMA that do promote transfection. Our results demonstrate that entirely chemical approaches to oxidation and reduction can be used to achieve redox-based ‘on/off’ control of cell transfection similar to that achieved using electrochemical methods.     

Comparison of drag reduction, rheology, microstructure and stress-induced precipitation of dilute cationic surfactant solutions with odd and even alkyl chains

Cationic surfactant systems of different alkyl chain lengths with counterion, C_nTAC(5 mmol/l)/3-Cl-Benzoate(12.5 mmol/l) (n=15, 16, 17, 18), were investigated for drag reduction, rheological behaviors, microstructure, and stress-induced precipitation. These are the first measurements of these characteristics for odd chain length (C₁₅ and C₁₇) quaternary ammonium surfactants. The lower and upper effective drag reduction temperature limits, viscoelasticity, and stress-induced precipitation temperature increased with alkyl chain length. Krafft temperature, critical turbidity temperature, and lower drag reduction effectiveness temperature limit showed a zigzag odd-even effect, while the stress-induced precipitation temperature did not. Light microscopy and cryo-TEM showed that cooling the C₁₅ solution below 20 °C produced crystals, while above that temperature threadlike micelles were present. The same was true for the solutions of C₁₈ that had threadlike micellar network microstructures when clear and crystals formed upon cooling. Micellar solutions can remain in a homogenous metastable state at a temperature below the Krafft temperature and above the critical turbidity temperature for days without external disturbance. Imposition of flow stress causes the systems to overcome the energy barrier and precipitate.     

On the coupling between vibrational relaxation and molecular electronic transitions

Vibrational relaxation of a harmonic molecule in contact with its surrounding medium is studied, and its effect on the electronic relaxation rate in such molecules is examined. Results of earlier works which considered harmonic phonon models for the medium are extended to the case of a general thermal bath. The formal expression for the vibrational relaxation rate is modified but the general form of the final results for the electronic and vibrational time evolution is shown to remain intact.     

Swelling of Lalpha-phases by matching the refractive index of the water-glycerol mixed solvent and that of the bilayers in the block copolymer system of (EO)15-(PDMS)15-(EO)15

The swelling of Lalpha-phases from the block copolymer polyethylenoxide-b-polydimethylsiloxane-polyethylenoxide (EO)15-(PDMS)15-(EO)15 in water/glycerol mixtures is reported. At low and medium polymer concentrations (<60%), the block copolymer forms a turbid vesicular dispersion in water. With time, the small unilamellar vesicles (SUV) and the large multilamellar vesicles (MLV) separate into a two phase L1/Lalpha-system. The turbid dispersions of the Lalpha-phase below 60% of the compound become more and more transparent with increasing glycerol and at 60% of glycerol become completely clear. Replacement of water by the solvent glycerol thus lowers the turbidity of the dispersion and swells the interlamellar distance between the bilayers. A 20% aqueous L1/Lalpha-dispersion can thus be transformed into a single birefringent transparent Lalpha-phase. The swelling of the Lalpha-phase in water and the decrease of the turbidity of the dispersion by the addition of glycerol is explained by the matching of the refractive index of the solvent to the refractive index of the bilayers of the block copolymer. The matching of a refractive index lowers the Hamaker constant in the DLVO theory between the bilayers and therefore decreases the attraction between the bilayers what allows them to swell to a larger separation. The microstructures in the phases were determined by cryo- and FFR-TEM. The interlamellar distance between the bilayers was determined by SAXS measurements. The viscous properties of the Lalpha-phases were determined by oscillatory rheological measurements. In comparison to other Lalpha-phases from normal surfactants, the Lalpha-phases from the block copolymer (EO)15-(PDMS)15-(EO)15 have low shear moduli. This is probably due to the high flexibility of the poly dimethylsiloxane block in the bilayers what can be recognized on the non-spherical shapes of the SUV's.