Conformational analysis of furan and thiophen carbonyl derivatives

The 220 MHz NMR spectra of furan and thiophen carbonyl compounds were measured, and further investigated by benzene solvent shifts, induced chemical shifts by the lanthanide shift reagent Eu(FOD)₃; and by the Nuclear Overhauser effect.Two planar isomers of the furan derivatives exist in the ratio of ca. 1:1·05 ～ 1:1·18 (cis/trans), while the cis form of thiophen derivatives is favoured. Semi-empirical calculations (CNDO/2) are reported and the influence of sulfur 3d-orbitals are discussed.     

Inhibition mechanism of flavin by deprenyl as an acetylenic irreversible inhibitor

Possible inhibition mechanisms of flavin (isoalloxazine) with (−)-deprenyl as an acetylenic irreversible inhibitor have been investigated in detail by ab initio methods with the 6-31G* basis set through the simplified model compounds 3-formyl-2-imino-1-hydropyrazine and propargylamine. The resulting compounds have been verified by calculations with the 3-21G basis set using flavin itself and the model of (−)-deprenyl for confirmation of the reactions through the simplified models. Two cyclic O4,N5- and C4a,N5-covalent adducts have been found. The latter was the most stable and was considered to be the final irreversible product. The intermediates in the reaction, the acyclic C4a- or N5-allenic compounds and their hydrogen-transferred cyanine-type compounds, are in agreement with the results of experimental photochemical reactions. In most of the reaction processes, hydrogen migration played an important role. Received: 26 June 1998 / Accepted: 28 August 1998 / Published online: 11 November 1998     

On the equivalence between the microscopic frictional theory and transition-state theory

The generalized Langevin equations are presented by considering such microscopic motions of molecules described by the microscopic Hamiltonian whose potential function is quadratic and internal degree of freedom is multidimensional. Considering the long time behavior of the reactive mode, the Grote-Hynes equation has been derived from the generalized Langevin equations. Furthermore, we have proved that solving the Grote-Hynes equation is equivalent to solving the eigenvalue problem for the whole system, and then the Grote-Hynes treatment coincides with the transition-state theory for the whole system. © 1996 John Wiley & Sons, Inc.     

Electronic structure of polyperylene

The electronic structure of polyperylene is studied on the basis of the one-dimensional tight-binding SCF-CO (self consistent field-crystal orbital) method. The geometry of this polymer is optimized from the energetic point of view. The analysis of the electronic properties of polyperylene reveals that this polymer will be a promising member of the one-dimensional graphite as a new electrically conductive or semi-conductive material.     

Is the Beckmann rearrangement a concerted or stepwise reaction? A computational study

[reaction: see text] RB3LYP calculations were performed on the Beckman rearrangement by the use of three substrates, acetone oxime (1), acetophenone oxime (2), and cyclohexanone oxime (3). Acidic solvents were modeled by H+ (CH3COOH)3 and H3O+ (H2O)6, and reaction paths were determined precisely. For 1, a two-step process involving a sigma-type cationic complex was obtained. For 2, a three-step process with pi- and sigma-type complexes was found in H+ (CH3COOH)3 and a two-step process involving a sigma-type cationic complex was obtained in H3O+ (H2O)6. However, for 3, a concerted process without pi and sigma complexes was calculated, which leads to the product, epsilon-caprolactam. Three different mechanisms were explained in terms of FMO theory.     

Electron-intramolecular-vibration interactions in positively charged phenanthrene-edge-type hydrocarbons

Electron-phonon interactions in positively charged phenanthrene-edge-type hydrocarbons such as phenanthrene, chrysene, and picene are studied. The C-C stretching modes around 1500 cm(-1) and the low-frequency modes around 500 cm(-1) strongly couple to the highest occupied molecular orbitals (HOMO) in phenanthrene-edge-type hydrocarbons. The total electron-phonon coupling constants for the monocations (lHOMO) of 0.251, 0.135, and 0.149 eV for phenanthrene, chrysene, and picene, respectively, are estimated to be larger than those of 0.130, 0.107, and 0.094 eV for anthracene, tetracene, and pentacene, respectively. The phase patterns difference between the HOMO localized on carbon atoms which are located at the molecular edge in acene-edge-type hydrocarbons and the delocalized HOMO in phenanthrene-edge-type hydrocarbons is the main reason for the result. Strengths of orbital interactions between two neighboring carbon atoms in the HOMO become weaker with an increase in molecular size because the electron density on each carbon atom in the HOMO becomes smaller with an increase in molecular size in phenanthrene-edge-type hydrocarbons. On the other hand, the frontier orbitals of acene-edge-type hydrocarbons have somewhat nonbonding characters and thus cannot strongly couple to the totally symmetric vibrational modes compared with the frontier orbitals of phenanthrene-edge-type hydrocarbons. This is the reason why the lHOMO value for phenanthrene-edge-type hydrocarbons decreases with an increase in molecular size more significantly than that for acene-edge-type hydrocarbons, and the reason why the lHOMO value for polyphenanthrene with C2v geometry (0.033 eV) is estimated to be similar to that for polyacene (0.036 eV). The reorganization energies between the neutral molecules and the corresponding monocations for phenanthrene-edge-type hydrocarbons with large molecular size are estimated to be larger than those for acene-edge-type hydrocarbons with large molecular size.     

Hydrogen bonds in gas-phase clusters between halide ions and olefins

Gas-phase clustering reactions of halide ions (X- = F-, Cl-, Br-, and I-) with ethylene (C2H4) and propylene (C3H6) were studied with a pulsed electron beam mass spectrometer. Bonding energies of all cluster ions were found to be less than 10 kcal/mol, i.e., no anion-initiated polymerization of C2H4 and C3H6 took place. For the cluster F-(C2H4)n, a small gap in the binding energy is observed between n = 4 and 5 suggesting that the first shell is completed with n = 4. For larger halide ions, the bond energies for the clusters X-(C2H4)n were found to be nearly n independent. For Cl-(C3H6)n a steep decrease in binding energies was observed between n = 2 and 3 and n = 3 and 4. The structure of the cluster ions was investigated by ab initio calculations. X-(C2H4)n complexes were calculated to have hydrogen-bond geometries regardless of the identity of the halide ions, and bidentate (chelate) type geometries of X-(C3H6)1 were found.     

A DFT study on proton transfers in hydrolysis reactions of phosphate dianion and sulfate monoanion

B3LYP calculations were carried out on hydrolysis reactions of monosubstituted(R) phosphate dianion and sulfate monoanion. In the reacting system, water clusters (H₂O)₂₂ and (H₂O)₃₅ are included to trace reaction paths. For both P and S substrates with R = methyl group, elementary processes were calculated. While the phosphate undergoes the substitution at the phosphorus, the sulfate does at the methyl carbon. For the S substrate with R = neopentyl group, the product tert‐amyl alcohol was found to be formed via a dyotropic rearrangement from the neopentyl alcohol intermediate. For R = aryl groups, transition‐state geometries were calculated to be similar between P and S substrates. Calculated activation energies are in good agreement with experimental values. After the rate‐determining transition state of the substitution, the hydronium ion H₃O⁺ is formed at the third water molecule. It was suggested that alkyl and aryl substrates are of the different reactivity of the hydrolysis. © 2014 Wiley Periodicals, Inc.     

MO calculations of episulfonium ion intermediates and regiospecificity in the additions of Cl−

The calculations were carried out for the ethylene, propylene, iso-butylene and butadiene episulfonium ion intermediates by CNDO/2 method to optimize the geometric parameters and investigate the electronic states of the intermediates, resulting that the p-form intermediates were unexpectedly most stable. It was shown that the differences in extension of the lowest unoccupied molecular orbitals on ethylenic carbon atoms in the intermediates have an important role on the regiospecificity of the ring-opening additions of Cl^? to the intermediates.     

Midgap levels of photoexcited conductive polymers. II. Detailed analysis of trans-polyacetylene

We have studied in more detail aspects of the soliton-antisoliton pair in a trans-polyacetylene chain based on our previous study of the midgap levels associated with the photogenerated oppositely charged soliton-antisoliton pair in conductive polymers employing the concept of the molecular orbital interaction (Part I of this study, this issue). The intersoliton distance has been estimated to be about 10 Å from the Pariser–Parr–Pople method. We have found that the energy gap between the midgap levels is estimated to be 0.45 eV, being significantly related to an additional photoinduced absorption.