Improved staining of phosphoproteins with high sensitivity in polyacrylamide gels using Stains‐All

An improved Stains‐All (ISA) staining method for phosphoproteins in SDS‐PAGE was described. Down to 0.5–1 ng phosphoproteins (α‐casein, β‐casein, or phosvitin) can be successfully selectively detected by ISA stain, which is approximately 120‐fold higher than that of original Stains‐All stain, but is similar to that of commonly used Pro‐Q Diamond stain. Furthermore, unlike the original Stains‐All protocol that was time consuming and light unstable, ISA stain could be completed within 60 min without resorting to protect the gels from light during the whole staining procedure. According to the results, it is concluded that ISA stain is a rapid, sensitive, specific, and economic staining method for a broad application to the research of phosphoproteins.     

A Facile Preparation of the Co3O4 Villiform Nanostructure

A Co₃O₄ villiform nanostructure was prepared by the aid of the cobalt oxalate precursor and characterized with x-ray diffraction (XRD), transmission electron microscope (TEM), scanning electron microscopy (SEM) and UV-vis spectrum. It is found that the villiform structure obtained consists of Co₃O₄ nanorods with diameters of 50–80 nm. Moreover, the UV-vis absorptions of the villiform Co₃O₄ show the apparent blue shifts by comparison with the bulk Co₃O₄, indicating a quantum size effect similar to the free Co₃O₄ nanoparticles.     

Fluorescent staining of protein in SDS polyacrylamide gels by salicylaldehyde azine

As a noncovalent fluorescence probe, in this study, salicylaldehyde azine (SA) was introduced as a sensitive fluorescence‐based dye for detecting proteins both in 1D and 2D polyacrylamide electrophoresis gels. Down to 0.2 ng of single protein band could be detected within 1 h, which is similar to that of glutaraldehyde‐silver stain, but approximately four times higher than that of SYPRO Ruby fluorescent stain. Furthermore, comparative analysis of the MS compatibility of SA stain with SYPRO Ruby stain indicated that SA stain is compatible with the downstream of protein identification by LC‐MS/MS. Additionally, the probable mechanism of the SA stain was investigated by molecular docking. The results demonstrated that the interaction between SA and protein was mainly contributed by hydrogen bonding and hydrophobic forces.     

Multiscale geometric modeling of macromolecules II: Lagrangian representation

Geometric modeling of biomolecules plays an essential role in the conceptualization of biolmolecular structure, function, dynamics, and transport. Qualitatively, geometric modeling offers a basis for molecular visualization, which is crucial for the understanding of molecular structure and interactions. Quantitatively, geometric modeling bridges the gap between molecular information, such as that from X‐ray, NMR, and cryo‐electron microscopy, and theoretical/mathematical models, such as molecular dynamics, the Poisson–Boltzmann equation, and the Nernst–Planck equation. In this work, we present a family of variational multiscale geometric models for macromolecular systems. Our models are able to combine multiresolution geometric modeling with multiscale electrostatic modeling in a unified variational framework. We discuss a suite of techniques for molecular surface generation, molecular surface meshing, molecular volumetric meshing, and the estimation of Hadwiger's functionals. Emphasis is given to the multiresolution representations of biomolecules and the associated multiscale electrostatic analyses as well as multiresolution curvature characterizations. The resulting fine resolution representations of a biomolecular system enable the detailed analysis of solvent–solute interaction, and ion channel dynamics, whereas our coarse resolution representations highlight the compatibility of protein‐ligand bindings and possibility of protein–protein interactions. © 2013 Wiley Periodicals, Inc.     

Understanding the electronic energy transfer pathways in the trimeric and hexameric aggregation state of cyanobacteria phycocyanin within the framework of Förster theory

In the present study, the electronic energy transfer pathways in trimeric and hexameric aggregation state of cyanobacteria C‐phycocyanin (C‐PC) were investigated in term of the Förster theory. The corresponding excited states and transition dipole moments of phycocyanobilins (PCBs) located into C‐PC were examined by model chemistry in gas phase at time‐dependent density functional theory (TDDFT), configuration interaction‐singles (CIS), and Zerner's intermediate neglect of differential overlap (ZINDO) levels, respectively. Then, the long‐range pigment‐protein interactions were approximately taken into account by using polarizable continuum model (PCM) at TDDFT level to estimate the influence of protein environment on the preceding calculated physical quantities. The influence of the short‐range interaction caused by aspartate residue nearby PCBs was examined as well. Only when the protonation of PCBs and its long‐ and short‐range interactions were properly taken into account, the calculated energy transfer rates (1/K) in the framework of Förster model at TDDFT/B3LYP/6‐31+G* level were in good agreement with the experimental results of C‐PC monomer and trimer. Furthermore, the present calculated results suggested that the energy transfer pathway in C‐PC monomer is predominant from β‐155 to β‐84 (1/K = 13.4 ps), however, from α‐84 of one monomer to β‐84 (1/K = 0.3–0.4 ps) in a neighbor monomer in C‐PC trimer. In C‐PC hexamer, an additional energy flow was predicted to be from β‐155 (or α‐84) in top trimer to adjacent β‐155 (or α‐84) (1/K = 0.5–2.7 ps) in bottom trimer. © 2013 Wiley Periodicals, Inc.     

The State of NaOH in NaOH/Poly(Sodium Acrylate) Composite

NaOH/poly(sodium acrylate) composites were prepared by in situ polymerization of acrylic acid with an overneutralization level by adding excess NaOH. The composites were studied by XRD, IR and ²³Na MAS NMR spectroscopy. The results showed that the high neutralization degree (>100%) may lead to a complete polymerization. Both XRD and ²³Na MAS NMR spectra did not show any peaks of phase-separated NaOH or Na₂CO₃ until the neutralization degree was up to 217.5%. It can be presumed that the aggregates of Na⁺ ions can contain approximately two Na⁺ units for every carboxyl group before the phase separation.     

Structure and Activity of RNase A in Sodium Dodecyl Sulphate Solutions

The structure and activity of RNase A in sodium dodecyl sulphate solutions were investigated at 25.0±0.1 and pH 7.00. The results show that with increasing sodium dodecyl sulphate concentration, the structure of RNase A is collapsed gradually, however, the activity of RNase A is first increased and then decreased. This is mainly due to the different effect of SDS at different SDS concentration.     

Preparation and Characterization of Polymer‐Protected Pt@Pt/Au Core‐Shell Nanoparticles

Poly(N‐vinyl‐2‐pyrolidone) protected Pt‐core bimetallic Pt/Au‐shell (Pt@Pt/Au) nanoparticles were prepared by multi‐step reduction of HAuCl₄ and H₂PtCl₆ alternately by hydrogen adsorbed on platinum atom. Transmission electronic microscopy (TEM) and x‐ray diffraction (XRD) were used to characterize Pt@Pt/Au nanoparticles. The structure of the shell of the nanoparticles seems to be the Au‐Pt solid solution.     

Effect of Demulsifiers on Dilatational Properties of Crude Oil–Water Interfaces

The dilatational properties of polyether demulsifiers PEA, PEB, PEC, PED, PEF, and PEG at the decane-water interface were investigated. Meanwhile, the effect of demulsifiers with different structures on interfacial dilatational modulus of diluted crude oil also was explored. The properties of demulsifiers are compared and analyzed in combine with the dilatational parameters at decane-water interface and at 5% crude oil-water interface. The results show that interfacial dilatational viscoelasticity could characterize the interfacial behavior of demulsifiers. The demulsifiers, which have different kinds or structures, have different effects on destroying the interfacial film of crude oil with increasing bulk concentration. Therefore, the dosage of demulsifier is a very important role in controlling nature of crude oil film.     

Fe2O3/Al2O3氧载体用于甲烷化学链燃烧：负载量与制备方法的影响

以不同方法制备了系列Fe₂O₃/Al₂O₃氧载体,采用XRD、H₂-TPR、CH₄-TPR、O₂-TPD和BET等分析技术对氧载体进行了表征。研究了不同Fe₂O₃负载量氧载体的甲烷化学链燃烧性能,考察了不同制备方法对Fe₂O₃/Al₂O₃氧载体结构、反应性和产物选择性的影响。结果表明,Fe₂O₃负载量对氧载体活性及产物中CO₂选择性的影响较大,负载量较低时氧载体活性较低且引起甲烷部分氧化产物CO含量增加。制备方法亦对氧载体与甲烷的反应活性有所影响,整体上共沉淀法制备的质量分数60％Fe₂O₃/Al₂O₃氧载体具有较高的氧化活性和化学链循环稳定性。其在反应温度850℃、反应时间15 min、30次循环后甲烷转化率及产物中CO₂选择性均未见明显降低。