Quantitative validation of different protein precipitation methods in proteome analysis of blood platelets

For the preparation of proteins for proteome analysis, precipitation is frequently used to concentrate proteins and to remove interfering compounds. Various methods for protein precipitation are applied, which rely on different chemical principles. This study compares the changes in the protein composition of human blood platelet extracts after precipitation with ethanol (EtOH) or trichloroacetic acid (TCA). Both methods yielded the same amount of proteins from the platelet preparations. However, the EtOH-precipitated samples had to be dialyzed because of the considerable salt content. To characterize single platelet proteins, samples were analyzed by two-dimensional fluorescence differential gel electrophoresis. More than 90% of all the spots were equally present in the EtOH- and TCA-precipitated samples. However, both precipitation methods showed a smaller correlation with nonprecipitated samples (EtOH 74.9%, TCA 79.2%). Several proteins were either reduced or relatively enriched in the precipitated samples. The proteins varied randomly in molecular weight and isoelectric point. This study shows that protein precipitation leads to specific changes in the protein composition of proteomics samples. This depends more on the specific structure of the protein than on the precipitating agent used in the experiment.     

Optisch aktive übergangsmetall-komplexe : XXV. Substituenteneinflüsse auf die intramolekulare epimerisierung von tetragonal-pyramidalen molybdanund wolfram-komplexen

The synthesis, IR, ¹H NMR and UV spectra of optically active square pyramidal cyclopentadienyldicarbonyl-molybdenum and -tungsten complexes with Schiff bases, derived from methyl-substituted pyridine carbaldehyde(2) and S-(—)-α-methylbenzylamine, are described. The epimerisation of these complexes, measured polarimetrically at 75–97°C in DMF, follows a 1^st order rate law and represents a regular pentatopal skeletal rearrangement. The inductive effect of a methyl group in the para position of a pyridine ring leads to a retardation of the epimerisation compared to unsubstituted complexes. The rate constants decrease even more if an ortho methyl group is introduced into the pyridine system, since additional steric effects are introduced. If the metal complex contains a 4,6-dimethyl-substituted Schiff base as a chelating ligand, the contributions of a 4- and a 6-methyl group are additive. A benzene ring fused to the 5,6-positions of the pyridine system also leads to stabilisation of the configuration.     

Ringerweiterungsreaktionen von (Z)-styryloxiranen unter Phenylring-Beteiligung: bildung von 2,7-dihydro-3,4-benzoxepinen

The thermal ring expansion reaction of (Z)-styryloxiranes ($\text{7}$-$\text{9}$) involves phenylring participation leading to 2,7-dihydro-3,4-benzoxepins ($\text{10}$-$\text{12}$).     

2,6-dicyano-1,5-dimethylsemibullvalene as a probe for homoaromatic molecules of the Dewar-Hoffman type

The 2,6-dicyano-1,5-dimethylsemibullvalene (2d) synthesized via the bicyclo[3.3.0]octanedione 7 exists as a classical ground state which is lower in energy by less than 5 kcal/mole than the homoaromatic transition of the Cope rearrangement of 2d.     

Benchmarking of ruthenium initiators for the ROMP of a norbornenedicarboxylic acid ester

The kinetic study of ring-opening metathesis polymerization (ROMP) of a diester functionalised norbornene derivative, (±)-exo,endo-bicyclo[2.2.1]hept-5-ene-2,3-dicarboxylic acid diethyl ester, with a series of ruthenium benzylidene complexes revealed the applicability of these initiators for well defined polymerization reactions. Values for the rate of initiation as well as the rate of propagation of the initiators were determined and correlated to the molecular weight and polydispersity of the isolated polymers. As the only initiator providing an entry to virtually monodisperse polymers the classical “first generation Grubbs-catalyst” was identified, while N-heterocyclic carbene based initiators polymerized with a rate of propagation much higher than the rate of initiation yielding polymers with a broader molecular weight distribution.     

Neue Rheniumkomplexe mit Trichalkogenido- und Tetrachalkogenido-Chelatliganden

New Rhenium Complexes Containing Trichalcogenido and Tetrachalcogenido Chelate Ligands The reactions of Cp*ReCl₄ with polychalcogenide salts such as Na₂S₄ or (NEt₄)₂Se₆ lead initially to the violet trichalcogenido chelate complexes Cp*ReCl₂(E₃) (E = S ( 3a ), Se ( 3b )) which, due to their functional chloro ligands, can be used as intermediates for further reactions. Upon hydrolysis in moist solvents or aminolysis with tert. butylamine 3a, b are converted into the tetrachalcogenido chelate complexes Cp*Re(O)(E₄) (E = S ( 4a ), Se ( 4b )) and Cp*Re(N^tBu)(E₄) (E = S ( 5a ), Se ( 5b )), respectively. X-Ray structure analyses were carried out for the three mononuclear cyclo-oligoselenido compounds 3b–5b . It appears that the size of the Se^2?_n chelate ring (n = 3 or 4) essentially depends on steric factors within the coordination sphere of rhenium.     

Alkaline Earth Transition Metal Antimonides AT4Sb12 (A = Ca,Sr, Ba; T = Fe,Ru, Os) with LaFe4P12-Structure

The title compounds were prepared by reaction of CaSb₂, SrSb₂, or BaSb₃ with the transition metals and antimony in sealed silica tubes. They crystallize with the cubic LaFe₄P₁₂-structure, which was refined from single-crystal X-ray data of CaFe₄Sb₁₂, SrRu₄Sb₁₂, and BaRu₄Sb₁₂ to residuals of R = 0.014, 0.016, and 0.014, respectively. The thermal parameters of the alkaline earth ions increase with decreasing ionic size. The Sb? Sb distances are greater in the iron compound than they are in the two ruthenium compounds. This is rationalized to be due to a larger portion of electrons in antibonding Sb? Sb states in the iron compound.     

Characterization of Carbohydrates in Paper and Paper Pulps Using Anion Exchange Chromatography and Principal Component Analysis

In the course of this investigation, a method for the characterization and differentiation of paper pulps was developed. After hydrolyzation of the papers and the respective raw pulps with trifluoroacetic acid, the hydrolyzates were analyzed with respect to their carbohydrate composition using ion exchange chromatography. The variations in carbohydrate composition mainly arise from the various hemicelluloses of the papers and pulps. The chromatographic results were then further processed using principal component analysis which allows correlating the various papers to different pulp materials.     

Spectrophotometric determination of total phenolics by solvent extraction and sorbent extraction optosensing using flow injection methodology

Flow injection analysis (FIA) procedures for the Spectrophotometric determination of phenol involving in-line concentration by solvent and sorbent extraction have been developed. The imine product formed in the reaction between phenol and 4-aminoantipyrine (4-AAP) is either extracted into chloroform (solvent extraction) or is temporarily retained on C₁₈-modified silica material contained in a microcolumn (sorbent extraction). In the latter case two variants of detection have been used namely the Spectrophotometric measurement of the methanolic eluent containing the concentrated dye and at-column optosensing of the retained reaction product followed by methanol elution to maintain reversibility of the process. In the solvent extraction procedure a 10-fold increase of sensitivity compared to the common FIA method without extraction is achieved but no corresponding improvement in detectability is observed. Under optimized conditions the detection limit amounts to 8 μg l⁻¹. Using sorbent extraction methodology, high concentration factors can be obtained when large sample volumes are used. The only limitation in getting correspondingly lower detection limits are an increasingly high and variable blank value with sampling volume. The detection limits obtained for measurement of the absorbance in the eluent and on-column optosensing are 11 μg l⁻¹ and 0.4 μg l⁻¹, respectively. A study of the extractability of various phenol derivates using both solvent and sorbent extraction revealed lower relative response rates compared to the FIA method without extraction. Phenolics that possess an additional acidic group are present in ionized form at the high pH of the assay and are not extractable at all.     

Carbonyl‐Komplexe von Chrom,Molybdän und Wolfram mit Isocyanacetat. Reaktionen am koordinierten Isocyanacetat. Stabilisierung von Isocyanessigsäure und Isocyanacetylchlorid am Metall. Isocyanopeptide [1]

Carbonyl Complexes of Chromium, Molybdenum and Tungsten with Isocyano Acetate. Reactions of Coordinated Isocyanoacetate. Stabilization of Isocyanoacetic Acid and Isocyanoacetyl Chloride at the Metal Atom. Isocyanopeptides The reactions of [(OC)₅MCNCH₂CO₂Et] (M = Cr, W) with Na[N(SiMe₃)₂] or with KOH afford the isocyanoacetate complexes [(OC)₅MCNCH₂CO₂]^? ( 1,2 ). Similarly, the complex [(OC)₃Mo(CNCH₂CO₂^?Li⁺)₃] ( 4 ) was obtained from [(OC)₃Mo(CNCH₂CO₂Et)₃] ( 3 ) and LiOH. Protonation of 1 and 2 affords the sublimable isocyanoacetic acid complexes [(OC)₅MCNCH₂CO₂H] ( 5 , 6 ; M = Cr, W) in which the functional isocyanide is stabilized at the metal atom. Reactions of [(OC)₅WCNCH₂CO₂^?K⁺] and of [(OC)₃Mo(CNCH₂CO₂^?Li⁺)₃] with oxalyl dichloride give the isocyanoacetyl chloride compounds [(OC)₅WCNCH₂COCl] ( 9 ) (sublimable) and [(OC)₃Mo(CNCH₂COCl)₃] ( 10 ); the latter ( 10 ) was not isolated. Complexes 9 and 10 were reacted in situ with β‐alanine, glycine, phenylalanine and methionine esters as well as the peptide esters GlyGlyOEt, PhePheOMe, Phe‐β‐AlaOMe, and GlyGlyGlyOMe to form the isocyanoacetyl amino acid esters ( 11 ‐ 14 ) and the isocyanoacetyl peptide esters ( 15 ‐ 18 ) which are stabilized at the molybdenum atom.