Biosynthesis of isoprenoids. purification and properties of IspG protein from Escherichia coli

[Structure: see text]. The IspG protein is known to catalyze the transformation of 2-C-methyl-d-erythritol 2,4-cyclodiphosphate into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the nonmevalonate pathway of isoprenoid biosynthesis. We have found that the apparent IspG activity in the cell extracts of recombinant Escherichia coli cells as observed by a radiochemical assay can be enhanced severalfold by coexpression of the isc operon which is involved in the assembly of iron-sulfur clusters. The recombinant protein was isolated by affinity chromatography under anaerobic conditions. With a mixture of flavodoxin, flavodoxin reductase, and NADPH as the reducing agent, stringent assay methods based on photometry or on 13C NMR detection of multiply 13C-labeled substrate/product ratios afforded catalytic activities greater than 60 nmol mg(-1) min(-1) for the protein "as isolated" (i.e., without reconstitution of any kind). Lower apparent activities were found using photoreduced deazaflavin as an artifactual electron donor, whereas dithionite was unable to serve as an artificial electron donor. The apparent Michaelis constant for 2-C-methyl-D-erythritol 2,4-cyclodiphosphate was 700 microM. The enzyme was inactivated by EDTA and could be reactivated by Mn2+. The pH optimum was at 9.0. The protein contained 2.4 iron ions and 4.4 sulfide ions per subunit. The replacement of any of the three conserved cysteine residues afforded mutant proteins which were devoid of catalytic activity and contained less than 6% of Fe2+ and less than 23% of S2- as compared to the wild-type protein. Sequence comparison indicates that putative IspG proteins of plants, the apicomplexan protozoan Plasmodium falciparum, and bacteria from the Bacteroidetes/Chlorobi group contain an insert of about 170-320 amino acid residues as compared with eubacterial enzymes.     

Transition metal methylene complexes : III. Methylene (CH2), a carbonyl analogous ligand; crystal structure of μ-methylenebis(carbonyl-η5-cyclopentadienylrhodium)(Rh—Rh

μ-Carbonylbis(carbonyl-ν⁵-cycopentadienylrhodium)(Rh—Rh) reacts with N-methyl-and N-ethyl-N-nitrosourea in boiling benzene to yield the dinuclear, diamagnetic, neutral rhodium complexes μ-methylene- (A) and μ-ethylidenebis(carbonyl-η⁵-cyclopentadienylrhodium)(Rh—Rh) (B), respectively. Deuterium labelled experiments prove the origin of the metal-stabilized methylene ligand to be the alkyl group of the organic precursor. This new method of preparation of transition metal—methylene complexes may be used as an alternative to the commonly used diazo method; the latter method was shown to work with diazodiethylmalonate and dicarbonyl-η⁵-cyclopentadienylrhodium, the reaction yielding μ-bis(ethoxycarbonyl)methylenebis(carbonyl-η⁵-cyclopentadienylrhodium)(Rh—Rh).Compound A crystallizes in the triclinic system, P$\text{1}$, and with cell constants of a 803.42(5), b 909.98(6), c 938.81(2) pm, α 74.402(3), β81.923(3), and γ 83.685(6)°. The unit cell volume and the calculated density are 651.6 ų and 2.069 g cm^-3, for one molecule in the asymmetric unit. The molecular geometry of μ-CH₂[η⁵-C₅H₅Rh(CO)]₂ was established from 2718 unique reflections collected with a computer-controlled diffractometer and refined to a final R(F) = 0.0379. The molecular parameters derived from the single-crystal X-ray study conform to a remarkable degree with those found for μ-CO[η⁵-C₅H₅Rh(CO)]₂. Thus, the bridging ligands CH₂ and CO seem to be analogous in their effects on the structural characteristics of the molecular framework of the two molecules.     

R?ntgenspektrometrische Elementbestimmung in Abwasser: Probenvorbereitung und Matrixkorrekturverfahren

Zusammenfassung Für Elementbestimmungen in Abwasser wird ein Röntgenfluorescenzverfahren beschrieben. Zur Probenvorbereitung werden die Elemente durch Gefriertrocknung auf einem inerten Träger angereichert. Diese Anreicherung ist nicht selektiv und erfaßt praktisch alle in Abwasser gelösten und suspendierten Verunreinigungen. Für die Berechnung der Elementkonzentrationen aus den gemessenen Fluorescenzintensitäten wird ein Matrixkorrekturverfahren angegeben, welches dem unterschiedlichen Absorptionsverhalten der Probenmatrix Rechnung trägt. Die Massenabsorptionskoeffizienten werden durch Messung der diffus gestreuten Bremsstrahlung bzw. der Comptonstreustrahlung ermittelt. Die Selbstabsorption des zu bestimmenden Elementes wird rechnerisch berücksichtigt. Das Korrekturverfahren kann auf alle mit Röntgenfluorescenzanalyse bestimmbaren Elemente angewendet werden.

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Determination of elements in waste water by x-ray fluorescence analysis: Sample preparation and matrix correction method

Summary For sample preparation the elements are enriched upon an inert carrier by freeze-drying. This enriching procedure is not selective and collects all dissolved and suspended contaminations from the waste water. In order to calculate the element concentrations from the measured fluorescence intensities a matrix correction method is given which considers the different absorption behaviour of the matrix. The mass absorption coefficients are obtained by measuring the scattered X-ray tube spectrum or a Compton scattered X-ray tube line, respectively. The self-absorption of the element to be determined is taken into account. The correction method is applicable to all elements detectable by X-ray fluorescence.

Herrn Dr. H. Wagner danken wir für das stete Interesse, die zahlreichen konstruktiven Diskussionen und die Hilfe beim Abfassen des Manuskripts.     

Competition between van der Waals and hydrogen bonding interactions: structure of the trans-1-naphthol/N(2) cluster

The excitation energy in the multiphoton ionization spectrum of the trans-1-naphthol/N(2) cluster shows only a small red shift with respect to isolated naphthol, indicating a van der Waals pi-bound structure rather than a hydrogen-bonded one. To confirm this interpretation, high-level electronic structure calculations were performed for several pi- and hydrogen-bonded isomers of this cluster. The calculations were carried out at the second order M?ller-Plesset (MP2) level of perturbation theory with the family of correlation consistent basis sets up to quintuple-zeta quality including corrections for the basis set superposition error and extrapolation to the MP2 complete basis set (CBS) limit. We report the optimal geometries, vibrational frequencies, and binding energies (D(e)), also corrected for harmonic zero-point energies (D(0)), for three energetically low-lying isomers. In all calculations the lowest energy structure was found to be an isomer with the N(2) molecule bound to the pi-system of the naphthol ring carrying the OH group. In the CBS limit its dissociation energy was computed to be D(0) = 2.67 kcal/mol (934 cm(-1)) as compared to D(0) = 1.28 kcal/mol (448 cm(-1)) for the H-bound structure. The electronic structure calculations therefore confirm the assignment of the experimental electronic spectrum corresponding to a van der Waals pi-bound structure. The energetic stabilization of the pi-bound isomer with respect to the hydrogen-bonded one is rather unexpected when compared with previous findings in related systems, in particular phenol/N(2).     

A new and versatile Ugi/SNAr synthesis of fused 4,5-dihydrotetrazolo[1,5-a]quinoxalines

A combinatorial synthetic route yielding fused tetrazolo[1,5-a]quinoxalines is described. The use of 2-fluorophenylisocyanide in the Ugi-tetrazole reaction (tetrazole-U-4CR) followed by a nucleophilic aromatic substitution (S_NAr) affords the tricylic tetrazolo[1,5-a]quinoxaline moiety in good yields and with high diversity.     

Analysis of Colubroidea snake venoms by liquid chromatography with mass spectrometry: evolutionary and toxinological implications

The evolution of the venomous function of snakes and the diversification of the toxins has been of tremendous research interest and considerable debate. It has become recently evident that the evolution of the toxins in the advanced snakes (Colubroidea) predated the evolution of the advanced, front-fanged delivery mechanisms. Historically, the venoms of snakes lacking front-fanged venom-delivery systems (conventionally grouped into the paraphyletic family Colubridae) have been largely neglected. In this study we used liquid chromatography with mass spectrometry (LC/MS) to analyze a large number of venoms from a wide array of species representing the major advanced snake clades Atractaspididae, Colubrinae, Elapidae, Homalopsinae, Natricinae, Psammophiinae, Pseudoxyrhophiinae, Xenodontinae, and Viperidae. We also present the first sequences of toxins from Azemiops feae as well as additional toxin sequences from the Colubrinae. The large body of data on molecular masses and retention times thus assembled demonstrates a hitherto unsuspected diversity of toxins in all lineages, having implications ranging from clinical management of envenomings to venom evolution to the use of isolated toxins as leads for drug design and development. Although definitive assignment of a toxin to a protein family can only be done through demonstrated structural studies such as N-terminal sequencing, the molecular mass data complemented by LC retention information, presented here, do permit formulation of reasonable hypotheses concerning snake venom evolution and potential clinical effects to a degree not possible till now, and some hypotheses of this kind are proposed here. The data will also be useful in biodiscovery.     

Highly sensitive semi-quantitative field test for the determination of chromium (VI) in aqueous samples

A method for the semi-quantitative colorimetric determination of chromium(VI) at sub μg/L levels after sorptive preconcentration is presented. The method is based on the retention of the reaction product (preformed in liquid phase) between Cr(VI) and diphenylcarbazide on membrane embedded cation exchange material. The color intensity of the membrane can be correlated to Cr(VI) concentrations in the range 0.05–50 μg/L (i.e. almost three orders of magnitude lower than the conventional spectrophotometric procedure) with a detection limit of about 10 ng/L (using 50 mL of sample volume). Due to the visual inspection mode and comparative color detection the precision is only 30–80% rsd which, however, is regarded as sufficient for screening purposes. Analysis of real samples including different kinds of waters and extracts of soil and filter collected airborne particulate matter demonstrated the applicability of the method for fast and species selective screening. Recovery experiments generally gave reasonably good results, yet also revealed the risk of the conversion of chromium species during sample pretreatment procedures due to redox reactions. Received: 1 December 1997 / Revised: 23 February 1998 / Accepted: 10 March 1998     

Electronic Structure and Photophysical Properties of Isoindole and its Benzo[f]- and Dibenzo[e,g]-Derivatives

The synthesis of N-methyl-benz[f]isoindole ( 2 ) and N-methyl-dibenz[e,g]isoindole ( 3 ) is reported. The NMR. spectra of N-methyl-isoindole ( 1 ) and of 2 have been analysed and the implications concerning the alternation of bond lengths are discussed. The photophysical properties of 1 to 3 have been investigated by the following methods: HeI photoelectron (PE.) spectroscopy, UV./VIS. absorption (polarization measurements by the stretched-foil technique) and emission spectroscopy (fluorescence spectra, lifetimes and quantum yields, phosphorescence spectra), and flash spectroscopy (triplet-triplet absorption spectra). The discussion of the results is based on HMO. and PPP SCF CI. calculations and points to the relationship between the heterocycles 1 to 3 and the corresponding benzenoid hydrocarbons obtained by replacement of the ? NMe? subunit by ? CH?CH? . Some comments concerning the ground state properties of isoindole and related compounds are derived from the analysis of their electronic structure.     

Schnelle Photometrie komplizierter biochemischer Mehrkomponentensysteme

Zusammenfassung Eine Übersicht über die schnelle photometrische Analyse komplizierter biochemischer Mehrkomponentensysteme wird gegeben. Zunächst werden apparative Probleme und Meßbedingungen behandelt. Anschließend werden die Auswertverfahren für Mehrstoffsysteme in homogener Lösung (multiplikative Farbmischung) und für solche mit inhomogener Verteilung (additive Farbmischung) beschrieben. Als praktische Anwendungsbeispiele dienen die Analyse von Nucleotidsummenspektren und Meerschweinchengehirnreflexionspektren sowie die Bestimmung des Oxigenierungsgrades von Hämoglobin.

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Rapid photometry of complicated biochemical multi-component systems

After discussing general problems concerning apparatus and measuring conditions the analysis of multi-component systems in homogeneous solutions (multiplicative colour mixture) and of those with inhomogeneous distribution (additive colour mixture) is described. Analysis of nucleotides and guinea pig brain and determination of the degree of oxygenation of haemoglobin are presented as examples.

     

Direkte fluorimetrische Bestimmung von 3,4-Benzpyren im w?\rigen Medium

Zusammenfassung Es wurde eine direkte Bestimmung des 3,4-Benzpyrens in wä\riger Lösung beschrieben, die auf der Löslichkeitserhöhung beruht, die das in Wasser schwer lösliche 3,4-Benzpyren durch Coffein erfährt. Es können so noch 4 ng/ml bei der angegebenen Standardisierung bestimmt werden. Bei der Direktbestimmung des 3,4-Benzpyrens im System Coffein-Wasser ist ein p_H >6,0 einzuhalten, da bei höheren Wasserstoffionenkonzentrationen die Fluorescenzintensität stark abnimmt.

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Direct fluorimetric determination of benzo(a)pyrene in aqueous medium

A method for the direct determination of benzo(a)pyrene in aqueous solution is based on the increase of its solubility by coffeine. 4 ng of benzo(a)pyrene/ml can be determined by the procedure described. In this direct determination in the system coffeine-water the p_H has to be adjusted to >6.0, as the fluorescence intensity considerably decreases with higher H⁺ concentrations.

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Eine ausführliche Darstellung findet sich in der Dissertation von G. Becker, Univ. Karlsruhe 1968.

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Die Messungen zu dieser Arbeit -wurden an dem Chemischen Untersuchungsamt für das Saarland, Saarbrücken, mit einem Spektralphotometer der Deutschen Forschungsgemeinschaft ausgeführt. Beiden Institutionen sind wir zu Dank verpflichtet.