Kinetics of deuterium isotope exchange between thiophenol or t-butylthiol and i-propylthiol

The rate constants and activation energies of bimolecular deuterium exchange in the systems: C₅H₅SD+i-C₃H₇SH and t-C₄H₉SD+i-C₃H₇SH in dilute C₆H₁₂ solutions have been established. The concerted H-transfer inside the cyclic dimer with two H-bonds formed in these systems is probably the rate-limiting step. The rate constant for H-transfer inside the cyclic dimer is independent of the acidic properties of the thiols.

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: C₆H₅SD+i-C₃H₇SH -C₄H₉SD+i-C₃H₇SH C₆H₁₂. -, , , . .

     

C CP MAS NMR, FTIR, X-ray diffraction and PM3 studies of some N-(ω-carboxyalkyl)morpholine hydrohalides

N-(ω-carboxyalkyl)morpholine hydrochlorides, OC₄H₈N(CH₂)_nCOOH·HCl, n=1–5, were obtained and analyzed by ¹³C cross polarization (CP) magic angle spinning (MAS) NMR, FTIR and PM3 calculations. The structure of N-(3-carboxypropyl)morpholine hydrochloride (n=3) has been solved by X-ray diffraction method at 100 K and refined to the R=0.031. The crystals are monoclinic, space group P2₁/c, a=14.307(3), b=9.879(2), c=7.166(1) Å, β=93.20(3)°, V=1011.3(3) ų, Z=4. In this compound the nitrogen atom is protonated and two molecules form a centrosymmetric dimer, connected by two N⁺–HCl⁻ (3.095(1) Å) and two O–HCl⁻ (3.003(1) Å) hydrogen bonds. ¹³C CP MAS NMR spectra, contrary to the solution, showed non-equivalence of the ring carbon atoms. The PM3 calculations predict a molecular dimer without proton transfer for an HCl complex, while for an HBr complex an ion pairs with proton transfer, and reproduces correctly the conformation of both dimers but overestimates H-bond distances. Shielding constants calculated from the PM3 geometry of ion pairs gave a linear correlation with the ¹³C chemical shifts in solids.     

Cerium(III/IV) and Cerium(IV)–Titanium(IV) Citric Complexes Prepared in Ethylene Glycol Medium

Summary. Cerium(III/IV) and Ce(IV)–Ti(IV) citric complexes were synthesized in ethylene glycol medium under conditions similar to those of the polymerized complex method (PCM). Solution phase ¹H, ¹³C NMR, solid state ¹³C CP MAS NMR and IR spectroscopy, and X-ray powder diffractometry were used to characterize the composition and structure of the synthesized products. Thermal decomposition of the isolated complexes was studied and a scheme of the processes taking place is proposed. Complexes of Ce(III) can be prepared at low temperature (40°C), only. In the presence of Ti(IV) ions, the oxidation takes place even at this temperature. A mixed-metal nature of the Ce(IV)–Ti(IV) complexes is established. The comparison between their composition and the one of analogous lanthanide(III)–Ti(IV) citrates contributes to the elucidation of the complexation process mechanism in the case of the PCM application. The increased charge of the complexation agent in the Ce⁴⁺–Ti⁴⁺ complex (in comparison with Ln ³⁺–Ti⁴⁺ citrates) is “compensated” by the increase of the relative number of the ligands with deprotonated OH group.     

Apparent molar volumes and compressibilities of alkaline earth metal ions in methanol and dimethylsulfoxide

Temperature dependencies of density of magnesium (II), calcium (II), strontium (II), barium (II) perchlorates as well as beryllium (II), and sodium trifluoromethanesulfonates in methanol and dimethylsulfoxide have been determined over the composition range studied. From density data the apparent molar volumes and partial molar volumes of the salts at infinite dilution as well as the expansibilities have been evaluated. The apparent molar isentropic compressibilities of alkaline earth metal perchlorates and beryllium (II) and sodium triflates in methanol and DMSO have been calculated from sound speed data obtained at T = 298.15 K.     

Rationalizing the role of SAR tolerance for ligand-based virtual screening

It is well appreciated that the results of ligand-based virtual screening (LBVS) are much influenced by methodological details, given the generally strong compound class dependence of LBVS methods. It is less well understood to what extent structure-activity relationship (SAR) characteristics might influence the outcome of LBVS. We have assessed the hypothesis that the success of prospective LBVS depends on the SAR tolerance of screening targets, in addition to methodological aspects. In this context, SAR tolerance is rationalized as the ability of a target protein to specifically interact with series of structurally diverse active compounds. In compound data sets, SAR tolerance articulates itself as SAR continuity, i.e., the presence of structurally diverse compounds having similar potency. In order to analyze the role of SAR tolerance for LBVS, activity landscape representations of compounds active against 16 different target proteins were generated for which successful LBVS applications were reported. In all instances, the activity landscapes of known active compounds contained multiple regions of local SAR continuity. When analyzing the location of newly identified LBVS hits and their SAR environments, we found that these hits almost exclusively mapped to regions of distinct local SAR continuity. Taken together, these findings indicate the presence of a close link between SAR tolerance at the target level, SAR continuity at the ligand level, and the probability of LBVS success.     

1H and 13C NMR characteristics of β-blockers

The β-blockers are important drugs and decades of clinical experience proved their high medical status. However, to the best of our knowledge, there is no complete assignment of (1)H and (13)C NMR resonances of popular representatives: acebutolol, alpenolol, pindolol, timolol and propranolol and the published NMR data on carvedilol and atenolol are incorrect. Therefore, (1)H and (13)C NMR spectroscopy was applied for the characterization of a series of β-adrenolytics: carvedilol (1), pindolol (2), alprenolol (3), acebutolol (4), atenolol (5), propranolol (6) and timolol (7). Two-dimensional NMR experiments (COSY, HMQC, HMBC, NOESY) allowed the unequivocal assignment of (1)H and (13)C spectra for solution (DMSO-d(6) ). Salts and bases can be easily distinguished based on (13)C chemical shifts which are within 65.0-65.5 ppm (OC2) and 46.9-47.0 (NC3) for hydrochlorides and larger, ca. 68.4 ppm (OC2) and 50.3-52.6 (NC3) for bases. NMR data of 1-7 should be included in pharmacopoeias.     

Kinetics and isotope fractionation in deuterium exchange between N1-methyl-N2-phenylthiourea and S-deuterated t-butylthiol in aprotic solvents

The kinetics and isotope fractionation of deuterium in the exchange reaction between N¹-methyl-N²-phenylthiourea and S-deuterated t-butylthiol in selected aprotic solvents: methylene chloride, tetrahydrofuran, acetone, dimethyl sulphoxide and acetonitrile have been determined. The rate of the deuterium exchange in N¹H site is higher than that in N²H site and both depend visibly on the solvent. The higher the polarity of the solvent the lower the rate constant of the exchange reaction. The equilibrium isotope effect is relatively high and depends on the solvent, however, no distinct correlation could be found between the fractionation factor and electron donor or acceptor properties of the solvent.     

Design of multitarget activity landscapes that capture hierarchical activity cliff distributions

An activity landscape model of a compound data set can be rationalized as a graphical representation that integrates molecular similarity and potency relationships. Activity landscape representations of different design are utilized to aid in the analysis of structure-activity relationships and the selection of informative compounds. Activity landscape models reported thus far focus on a single target (i.e., a single biological activity) or at most two targets, giving rise to selectivity landscapes. For compounds active against more than two targets, landscapes representing multitarget activities are difficult to conceptualize and have not yet been reported. Herein, we present a first activity landscape design that integrates compound potency relationships across multiple targets in a formally consistent manner. These multitarget activity landscapes are based on a general activity cliff classification scheme and are visualized in graph representations, where activity cliffs are represented as edges. Furthermore, the contributions of individual compounds to structure-activity relationship discontinuity across multiple targets are monitored. The methodology has been applied to derive multitarget activity landscapes for compound data sets active against different target families. The resulting landscapes identify single-, dual-, and triple-target activity cliffs and reveal the presence of hierarchical cliff distributions. From these multitarget activity landscapes, compounds forming complex activity cliffs can be readily selected.     

Kinetics of tritium isotope exchange between H2S and CH3OH vapor in glass vessels

Two different mechanisms of tritium exchange between and CH₃OH vapor in glass vessels have been found: (i) bimolecular exchange in the gas phase, (ii) pseudomonomolecular exchange between gaseous and CH₃OH adsorbed on the surface. The total and partial orders, rate constants and activation energies are given.

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, CH₃OH , : 1) 2) CH₃OH, . , .

     

2-Methylthio-imidazolins: a rare case of different tautomeric forms in solid state and in solution

Structural Chemistry - The synthesis and structure elucidation of two new compounds, 2-(methylthio)-1,3-diazaspiro[4.4]non-2-ene-4-one (1) and 2-(methylthio)-1,3-diazaspiro[4.4]non-2-ene-4-thione...