MtsslWizard: In Silico Spin-Labeling and Generation of Distance Distributions in PyMOL

MtsslWizard is a computer program, which operates as a plugin for the PyMOL molecular graphics system. MtsslWizard estimates distances between spin labels on proteins quickly with user-configurable options through a simple graphical interface. In default mode, the program searches for ensembles of possible MTSSL conformations that do not clash with a static model of the protein. Once conformations are assigned, distance distributions between two or more ensembles are calculated, displayed, and can be exported to other software. The program’s use is evaluated in a number of challenging test cases and its strengths and weaknesses evaluated. The benefits of the program are its accuracy and simplicity.     

Synthesis of a quinolone library from ynones

A library of 72 quinolones was synthesized from substituted anthranilic acids, using ynone intermediates. These masked β-dicarbonyl synthons allowed cyclization under milder conditions than previously reported quinolone syntheses.     

Kupferanalyse

Ohne Zusammenfassung     

Infrared spectra of edge-shared silicate tetrahedra

Dehydroxylated silica exhibits two well-defined infrared bands at 888 and 907 cm⁻¹ previously assigned to a highly reactive strained surface defect. Comparisons of the spectra of dehydroxylated silica to frequencies and intensities calculated using molecular orbital (MO) calculations and to spectra obtained for cyclodisiloxanes suggest that the strained surface defect consists of an edge-shared silicate tetrahedral ring. Changes in vibrational frequencies and peak intensities with ¹⁸O labeling for both the surface defect and the cyclodisiloxanes are consistent with those expected for ring vibrational modes. The IR bands associated with the strained edge-shared ring disappear when either the surface defects or the cyclodisiloxanes react with water. Reactions of the surface defect can be used to study how strain enhances the reactivity of Si-O-Si bonds for modeling phenomena such as stress corrosion cracking.