Organolithium Displacement of Aryl Anions from Tertiary Phosphine Derivatives of Diphenyl Ether

Abstract

Methyllithium displaces a phenyl anion from 10-phenyl-10H-phenoxaphosphine to produce a 70:30 mixture of 10-methyl-10H-phenoxaphosphine and starting phosphine. Butyllithium gives 50% conversion to 10-butyl-10H-phenoxaphosphine. These reactions could take place either by a one-step nucleophilic displacement or by ring cleavage followed by recyclization. To show the feasibility of the two-step process, non-heterocyclic lithiated tertiary phosphines were generated and shown to cyclize to phenoxaphosphines. For example, reaction of 2-phenoxyphenyldiphenylphosphine with phenyllithium produced 10-phenyl-10H-phenoxaphosphine (by lithiation ortho to oxygen followed by cyclization) along with triphenylphosphine (by direct displacement of 2-lithiodiphenyl ether). Other compounds prepared in this work: 2,2′-bis(diphenylphosphino)-diphenyl ether, bis(2-phenoxyphenyl)phenylphosphine, tris(2-phenoxyphenyl)phosphine, 4-carboxy-10-phenyl-10H-phenoxaphosphine, and the oxides and sulfides of the phosphines.     

Structure and NMR assignment in calcined and as-synthesized forms of AlPO-14: a combined study by first-principles calculations and high-resolution 27Al-31P MAS NMR correlation

The high-resolution 27Al and 31P NMR spectra of two as-synthesized forms of the microporous aluminophosphate AlPO-14 and the corresponding calcined-dehydrated form were assigned using both "first-principles" calculations of NMR parameters (GIPAW, as implemented in NMR-CASTEP) and a 27Al-31P heteronuclear correlation NMR experiment (MQ-J-HETCOR) that exploits 27Al multiple-quantum coherences and J couplings to identify Al-O-P linkages. NMR parameters calculated from published AlPO-14 crystal structures, which are derived from powder X-ray diffraction (XRD) data, are in poor agreement with experiment and it was necessary to optimize the structure geometry using energy minimization before satisfactory agreement was obtained. Comparison of simulated powder XRD patterns from the experimental and the energy-minimized structures shows that the changes in relative atomic positions in the optimized structure are relatively small and yield only minor adjustments in the Bragg peak intensities. These results indicate that a combination of NMR spectroscopy and first-principles calculation of NMR parameters may soon be considered a generally useful step in the refinement of the structures of microporous materials derived from powder diffraction data.     

A fluorescent dipyrrinone oxime for the detection of pesticides and other organophosphates

An N,N-carbonyl-bridged dipyrrinone oxime has been synthesized and studied as a potential sensor for organophosphates. The molecular sensor underwent a drastic colorimetric response upon formation of the adduct. The pesticide dimethoate was found to produce the biggest spectral response, with a limit of detection equal to 4.0 ppm using UV-visible spectroscopy. Minimal fluorescence "turn on" via a PET mechanism was seen, and molecular modeling studies were used to explain the lower than expected PET response. The X-ray crystal structure of the fluorescent dipyrrinone oxime was also obtained.     

Time-Resolved FRET and FLIM of Four-way DNA Junctions

Conformational transitions in a 4-way DNA junction when titrated with ionic solutions are studied using time-resolved fluorescence resonance energy transfer. Parameters characterising the transition in terms of critical ion concentration (c _1/2) and the Hill coefficient for ion binding are obtained by fitting a simple two-state model using steady-state spectra. Data obtained from a fluorescence lifetime plate reader and analysed by fitting a single exponential to donor fluorescence lifetime decays are shown to be in good agreement with the parameters obtained from steady-state measurements. Fluorescence lifetimes, however, offer advantages, particularly in being independent of fluorophore concentration, output intensity, inhomogeneity in the excitation source and output wavelength. We demonstrate preliminary FRET-FLIM images of DNA junction solutions obtained using a picosecond gated CCD which are in agreement with results from a fluorescence lifetime plate reader. The results suggest that time-resolved FRET-FLIM is sensitive to subtle structural changes and may be useful in assays based on 4-way DNA junctions.     

Improved silicon nitride surfaces for next-generation microarrays

This work reports how the use of a standard integrated circuit (IC) fabrication process can improve the potential of silicon nitride layers as substrates for microarray technology. It has been shown that chemical mechanical polishing (CMP) substantially improves the fluorescent intensity of positive control gene and test gene microarray spots on both low-pressure chemical vapor deposition (LPCVD) and plasma-enhanced chemical vapor deposition (PECVD) silicon nitride films, while maintaining a low fluorescent background. This results in the improved discrimination of low expressing genes. The results for the PECVD silicon nitride, which has been previously reported as unsuitable for microarray spotting, are particularly significant for future devices that hope to incorporate microelectronic control and analysis circuitry, due to the film's use as a final passivating layer.     

An EXAFS study of the formation of a nanoporous metal-organic framework: evidence for the retention of secondary building units during synthesis

EXAFS data measured from amorphous intermediates and crystallisation solutions provides the first evidence that trimeric iron oxide secondary building units remain intact during crystallisation of the metal-organic framework MIL-89 from starting materials to products.     

Carbon nanotube network formation from evaporating sessile drops

Fabrication of single-walled carbon nanotube (SWNT) networks using evaporation of SDS-SWNT sessile drops on a hydrophobized silicon substrate is reported. It is suggested that the organization of nanotubes during evaporation is controlled by aggregates (in the SDS-SWNT dispersion) and hydrophobicity of the substrate. On hydrophobic substrates, the evaporation of SDS-SWNT sessile drops proceeds through constant contact area. On hydrophilic substrates, nanotube aggregates in SDS-SWNT dispersion stop the contact line from moving, resulting in the formation of "coffee-stains". The (partial) removal of aggregates by centrifugation is essential for a freely moving contact line leading to the organization of nanotubes into a network of homogeneously distributed nanotubes on the most hydrophobic substrate. The evaporation of sessile drops was characterized by microscopic, spectroscopic, and topographical techniques.     

Elucidation of the Streptomyces coelicolor pathway to 4-methoxy-2,2'-bipyrrole-5-carboxaldehyde, an intermediate in prodiginine biosynthesis

The biosynthetic pathway to 4-methoxy-2,2'-bipyrrole-5-carboxaldehyde (MBC), a key intermediate in the biosynthesis of prodiginine antibiotics in Streptomyces coelicolor, has been elucidated using a combination of gene replacements and feeding experiments with chemically synthesised MBC and a synthetic analogue of a pathway intermediate.