A single amino acid Gly-tag enables metal-free protein purification

Analytically pure proteins are indispensable for diverse applications, including therapeutics. Here, we report a methodology where a single amino acid, glycine, enables metal-free protein purification. This robust platform is enabled by a Gly-tag resin for site-specific capture, enrichment, and release through chemically triggered C–C bond dissociation by resonance-assisted electron density polarization.

Gly-tag resin precisely captures and releases a protein with one glycine at the N-terminus. The user-friendly protocol delivers analytically pure protein free of metal contaminants.     

Photopolymerization initiated by charge-transfer complex. I. Photopolymerization of methylmethacrylate with the use of quinaldine-bromine and lutidine–bromine charge-transfer complexes as photoinitiator

Photopolymerization of MMA was carried out with quinaldine–bromine (QN–Br₂) and lutidine–bromine (LU–Br₂) charge-transfer complexes as initiators. The rate of polymerization R_p increased with rising monomer concentration and the monomer exponent was computed as unity. At first the rate of polymerization accelerated and then reduced as the initiator concentration was increased. The initiator exponent was 0.5. The reaction was carried out at three different temperatures and overall activation energy was calculated at 4.0 kcal/mol. The kinetic data and other evidence indicate that the overall polymerization takes place in a radical mechanism. A suitable mechanism is suggested.     

An ab initio theoretical study of electronic structure and properties of 2'-deoxyguanosine in gas phase and aqueous media

Molecular geometries of two structural forms of 2'-deoxyguanosine (keto-N9R and keto-N7R, R = the sugar moiety) considering both the C2'-endo and C3'-endo conformations of the sugar ring and those of the complexes of these species with two water molecules each were optimized employing the ab initio RHF procedure. A mixed basis set consisting of the 6-311+G* basis set for the nitrogen atom of the amino group and the 4-31G basis set for all the other atoms was used. The RHF calculations were followed by correlation correction of the total energy at the MP2 level. Both the structural forms of 2'-deoxyguanosine were solvated using the polarized continuum model (PCM) of the self-consistent reaction field (SCRF) theory and the corresponding RHF optimized geometries at the RHF and MP2 levels. Geometry optimization was also performed in aqueous media using the Onsager model at the RHF level using the above-mentioned mixed basis set, and subsequently, using the reoptimized geometries, single-point MP2 calculations were performed. It is found that both the keto-N9R and keto-N7R forms of 2'-deoxyguanosine as well as their complexes with two water molecules each would occur, particularly at the water-air interface. Though the normal Watson-Crick-type base pairing would not be possible with the keto-N7R form of 2'-deoxyguanosine(G*), two other (G*-C and G*-T) base pairing schemes may occur with this form of the nucleoside, which may cause mutation. The present calculated geometry of the keto-N9R form of the anti-conformation of 2'-deoxyguanosine including the dihedral angle chi(CN) agree satisfactorily with the available crystallographic results. The present results also agree satisfactorily with those obtained by other authors earlier for the keto-N9R form of 2'-deoxyguanosine using B3LYP and MP2 methods employing the 6-31G* basis set. Using transition state calculations, it is shown that tautomerism of guanine and other similar molecules where the tautomers would coexist would be facilitated by the occurrence of the H(+) and OH(-) fragments of water molecules. Further, this coexistence of the two tautomers appears to make the C8 carbon atom located between the N7 and N9 nitrogen atoms susceptible to attack by the OH(-) group. Thus, an explanation is obtained for the efficient formation of the reaction product 8-hydroxy-2'-deoxyguanosine, which serves as a biomarker for oxidative damage to DNA in biological systems.     

Spectrophotometric Determination of Rhenium(IV) with Thiocyanate,TX-100 and N,N′-Diphenylbenzamidine

A spectrophotometric method to determine rhenium(IV) at trace level is based on the extraction of Re(IV)-SCN^? complex in sulphuric acid media with N,N′-diphenylbenzamidine(DPBA) in presence of a non-ionic surfactant triton X-100 (TX-100) in chloroform. The complex shows maximum absorbance at 435 nm with amolar absorptivity value of 4.24 × 10⁴ L mol^?1 cm^?1 at an acidity range 3.5-6.5 M H₂SO₄. The method followed Beer's Law for the system Re(IV)-SCN^?(TX-100)-DPBA upto 4.0 μg Re(IV) mL^?1. The detection limit of the method is 5 ppb. None of the tested foreign ions, except molybdenum(VI), interfere with the determination of rhenium. The interference due to molybdenum could effectively be removed by prior precipitation with oxine. The effect of various analytical parameters on the extraction of the metal are discussed.     

The kinetics and mechanism of reaction between ethylenediaminetetraacetomanganate(III) and cyanide ion

Summary The title reaction has been followed spectrophotometrically at 325 nm (_max of [Mn(CN)₆]^3–) under pseudo-first order conditions with cyanide in a large excess at pH=10.0, I=0.1M (NaClO₄) and 25°C. The reaction follows first-order kinetics in [MnEDTA(OH)]^2– and exhibits variable-order dependence in [CN^–] one at high cyanide concentration, and two at low cyanide concentration. The product of above reaction has been identified as [Mn(CN)₆]^3–.The kinetics of the reverse reaction,i.e., the reaction of [Mn(CN)₆]^3- with EDTA^4– have also been followed spectrophotometrically. This reactions is first-order with respect to both [Mn(CN) ₆ ^3– ] and [EDTA^4–] and exhibits an inverse first-order dependence on [CN^–]. A six-step mechanism has been proposed in which the penultimate step is rate-determining. The activation parameters have been obtained and support the postulated mechanism.     

Tamarindus indica mucilage and its acrylamide-grafted copolymer as flocculants for removal of dyes

The application of Tamarindus indica seed mucilage (Tam), a food grade polysaccharide, and its acrylamide grafted copolymer as flocculants was assessed for the first time for removal of various types of dyes from model textile wastewater containing azo, basic, and reactive dyes. Acrylamide grafted T. indica mucilage (Tam-g-PAM) was obtained by ceric ion initiated polymerization technique. A series of contact time experiments were conducted to assess the system variables such as concentrations of mucilage and dyes and pH. These flocculants reduce the dye concentration by flocculation and settling. The grafted copolymer, Tam-g-PAM showed better results for dye removal. The optimal flocculant concentration, which was required to effect flocculation, was independent of dye concentration within the range examined. Both the flocculants performed better for removal of azo dyes than for reactive and basic dyes.     

Kinetics and mechanism of silver(I)-catalysed oxidation of malonic acid by peroxodiphosphate in acetate buffers

Summary The kinetics of the silver(I)-catalysed oxidation of malonic acid by peroxodiphosphate (pdp) was studied in acetate buffers. The rate law as represented by-d[pdp]/dt = {(k ₁ K _inf2 ^sup-1 [H⁺]² + k ₂[H⁺] + k ₃ K ₃)/ ([H⁺]²/K ₂ + [H⁺] + K ₃)}[pdp][Ag(I)] conforms to the proposed mechanism. The rate is independent of malonic acid concentrations. Acetate ions do not affect the rate; however, the rate decreases as the ionic strength increases. A probable portrait of reaction events is suggested. A comparative analysis of the reactivity pattern of malonic acid towards peroxodiphosphate and peroxodisulphate in presence of silver(I) has been made.     

Potassium peroxydiphosphate — Fructose redox system induced grafting of methyl methacrylate onto silk

In an attempt to modify fibrous protein, methyl methacrylate (MMA) has been graft copolymerized onto Mulberry silk in an aqueous medium by using peroxydiphosphate — fructose redox system. Graft copolymerizations were carried out at 45, 50, and 55 °C for a period from 1 to 6 hr. Percentage grafting was found to be dependent upon reaction temperature, time, concentration of monomer, acid, peroxydiphosphate and fructose. The rate of grafting (R _p ) and the induction period (I _p of MMA was determined as a function of total initial monomer concentration.     

Investigation of electronic structure and associated nuclear quadrupole interaction of adsorbed fluorine atoms on silicon surface

The electronic energy levels and wave functions of fluorine and chlorine atoms adsorbed at the <111> surface of silicon are obtained by the Hartree-Fock procedure applied to clusters simulating the surface structure. Minimising the total energy with respect to the positions of the halogen atoms, the Si-Cl distance in the adsorbed system was found to be in good agreement with that from a recent SEXAFS measurement, there being no corresponding data presently available for fluorine on silicon surface. The calculated¹⁹ f ^* nuclear quadrupole coupling constants using the electronic wave functions for SiH₃F and the larger cluster Si₄H₉F, simulating the surface, differed substantially in contrast to the situation for the Si-F distance, indicating that the quadrupole coupling is a more sensitive indicator of the adequacy of the cluster chosen to represent the surface system. Experimental results for the coupling constants are awaited for comparison with theory.     

De novo design of a redox-active minimal rubredoxin mimic

Metal-binding sites in metalloproteins frequently occur at the interfaces of elements of secondary structure, which has enabled the retrostructural analysis of natural proteins and the de novo design of helical bundles that bind metal ion cofactors. However, the design of metalloproteins containing beta-structure is less well developed, despite the frequent occurrence of beta-conformations in natural metalloproteins. Here, we describe the design and construction of a beta-protein, RM1, that forms a stable, redox-active 4-Cys thiolate Fe(II/III) site analogous to the active site of rubredoxin. The protein folds into a beta-structure in the presence and absence of metal ions and binds Fe(II/III) to form a redox-active site that is stable to repeated cycles of oxidation and reduction, even in an aerobic environment.