Synthesis of new 6-substituted purinyl-5′-nor-1′-homocarbanucleosides based on indanol

A series of new 6-substituted purinyl-5′-nor-1′-homocarbanucleosides based on indanol were synthesized from (±)-cis-3-hydroxymethyl-1-indanol, an appropriately functionalized derivative of which was reacted with 6-chloropurine in the presence of NaH and 18-crown-6 ether to prepare a key intermediate that gave access to the target molecules, purinylcarbanucleosides in which position 6 is occupied by a chloro, hydroxy, methoxy, amino or substituted phenyl group.     

Closed‐form rectangular atomic wave functions of an N‐dimensional atom

A closed‐form expression has been derived to obtain the N‐dimensional rectangular atomic wave functions. The wave functions can be obtained straightforwardly with the knowledge of the angular momentum quantum numbers and the dimension and there is no need to employ recursive methods as in previous works. © 2002 Wiley Periodicals, Inc. Int J Quantum Chem 88: 263–274, 2002     

Sulfate Ions in Titania Polymorphs

Sol-gel titania was sulfated by using sulfuric acid as hydrolysis catalyst, or by impregnating with ammonium sulfate fresh samples prepared with nitric acid or ammonium hydroxide as hydrolysis catalyst. Samples were characterized with X-ray powder diffraction, infrared spectroscopy, thermogravimetry and atomic absorption spectroscopy. Sulfate ions were found anchored to brookite and anatase phases, because they have short O—O atomic bond lengths slightly larger than the largest O—O bond length of sulfate ion. Since the shortest O—O atomic bond in anatase is smaller than the one in brookite, the sulfate ions are then less deformed when they are anchored to anatase, and consequently more stable. Therefore when the sample temperature is raised, the brookite with sulfate ions was transformed mainly to anatase and not into rutile, which is the most probably transformation when these ions are not involved. Sulfate ions also hindered anatase and brookite crystallite growing and stabilized the crystalline structure of anatase. When the sulfate ions are lost the crystalline anatase phase is transformed into rutile, leaving a large number of vacancies that favored atom diffusion and consequently the growing of rutile crystallites. The crystalline evolution of the samples as a function of the annealing temperature is almost independent of the sulfating method.     

Regioselectivity in acylation of oligosaccharides catalyzed by the metalloprotease thermolysin

Investigation of the acylation scope of carbohydrates by metalloprotease thermolysin immobilized on Celite as biocatalyst has been carried out. The reactions were performed in DMSO, a good solvent for carbohydrates, where the enzyme has previously shown its activity in transesterifications of sucrose, maltose and maltose-containing oligosaccharides. Surprisingly, no reaction was observed for glucose or the glucose-containing disaccharides, trehalose and lactose. In contrast, laurate monoesters of several sucrose-containing tri- and tetrasaccharides were synthetized through a one step transesterification using vinyl laurate as the acylating agent. Enzyme regioselectivity was accurately determined by HPLC/MS and the structure of the main regioisomers was established by a combination of NMR experiments. The preferred position of acylation in all cases was the 2-OH of the α-d-glucopyranose moiety linked 1→2 to the β-d-fructofuranose unit. These results correlate with the regioselectivity observed in the case of the disaccharide sucrose. A general carbohydrate binding motif for catalysis by thermolysin is proposed.     

Manganese,cobalt and nickel complexes with a novel 17-membered macrocycle containing an N5 donor set

Summary The synthesis of a new macrocycle containing phenanthroline and pyridine subunits is described. The reaction of 2,9-bis(hydrazone)-1,10-phenanthroline with 2,6-bis-(bromomethyl) pyridine in the presence of Mn^II, Co^II or Ni^II ion templates leads to the isolation, in high yield, of the seven-coordinate complexes [M(L³)Br₂] (L³ = 4,5, 6,7,8,9-phenanthrolino-14,15,16-pyridino-1,2,5,8,11,12,15 heptaazacycloheptadecane,2,10-diene). The compounds were characterized by physical measurements, which indicated that in all the complexes the ligand is acting as a pentadentate N₅ chelating agent.     

Trace determination of organotin compounds in water,sediment and mussel samples by low-pressure gas chromatography coupled to tandem mass spectrometry

A fast method for the determination of eight organotin compounds (OTs), monobutyltin (MBT), dibutyltin (DBT), tributyltin (TBT), tetrabutyltin (TeBT), monophenyltin (MPhT), diphenyltin (DPhT), triphenyltin (TPhT) and tetraphenyltin (TePhT), in water, sediments and mussels, was developed using low-pressure gas chromatography/tandem mass spectrometry (LPGC/MS/MS). The method is based on sodium diethyldithiocarbamate (DDTC) complexation of the ionic organotins, followed by extraction of the target matrices and derivatization by a Grignard reagent, as described in a previously published method for water samples. Solid-phase extraction was selected as extraction method from water samples after comparison with liquid-liquid extraction, but extraction of the OTs from sediment and mussel samples was performed using toluene. Matrix-matched calibration standards were used to minimize matrix effects. The analytical process was validated by the analysis of spiked blank samples. Performance characteristics such as linearity, detection limit (LOD), quantitation limit (LOQ), precision, and recovery were determined. Recoveries of OTs in spiked matrices ranged from 86-108% in water and from 78-110% in sediments and mussels, with precision values lower than 18%. Detection limits ranged from 0.1-9.6 ng L(-1) in water, and 0.03-6.10 microg kg(-1) in the other matrices. The present implementation of LPGC rather than conventional capillary GC permitted use of large-volume injection and reduced analysis time by a factor of two. The proposed methodology was applied to the determination of OTs in real samples of water, marine sediments and mussels from the west coast of the Mediterranean Sea (Spain).     

The applicability of DTA and DSC techniques to the study of the kinetics of phase transition reactions

Differential thermal analysis and differential scanning calorimetry techniques have been used to study the kinetics of phase transitions. The aragonite/calcite transformation was chosen as test reaction.Marked discrepancies were observed between the DTA kinetic results and those obtained from isothermal kinetic measurements. This disagreement is associated with the difficulty of determining accurately the reaction rate of the process from a DTA curve.In contrast, in DSC measurements, where the reaction rate is given by the height of the peak from the base-line, it is possible to get a satisfactory fit of the data, and the kinetic results obtained with this technique are in good agreement with the isothermal ones.

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Zusammenfassung Die Differentialthermoanalyse und DSC wurden zur Untersuchung der Kinetik von Phasenübergängen eingesetzt. Die Umwandlung Aragonit/Calcit wurde als Testreaktion gewählt.Bedeutende Diskrepanzen wurden zwischen den kinetischen Ergebnissen der DTA und den durch isotherme kinetische Messungen erhaltenen Ergebnissen beobachtet. Diese Abweichungen sind damit verbunden, daß es schwierig ist, die Reaktionsgeschwindigkeit des Vorgangs aus einer DTA-Kurve genau zu ermitteln.Bei DSC-Messungen,wo die Reaktionsgeschwindigkeit durch die Höhe des Peaks von der Grundlinie gegeben ist, kann eine befriedigende Anpassung der Daten erhalten werden, und die durch diese Technik erhaltenen kinetischen Ergebnisse sind in guter Übereinstimmung mit den isothermen Ergebnissen.

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Synthesis of proline-modified analogues of the neuroprotective agent glycyl-l-prolyl-glutamic acid (GPE)

The synthesis of ten proline-modified analogues of the neuroprotective tripeptide GPE is described. Five of the analogues incorporate a proline residue with a hydrophobic group at C-2 and two further analogues have this side chain locked into a spirolactam ring system. The pyrrolidine ring was also modified by replacing the γ-CH₂ group with sulfur and/or incorporation of two methyl groups at C-5.     

Buffers for the Physiological pH Range: Thermodynamics of the Second Dissociation of N-(2-Hydroxyethyl)piperazine-N′-2-hydroxypropanesulfonic Acid From 5 to 55°C

The second acidic dissociation constants pK ₂ of the ampholyte N-(2-hydroxyethyl) piperazine-N-2-hydroxypropanesulfonic acid (HEPPSO) have been determined at seven temperatures from 5 to 55°C from emf measurements utilizing hydrogen and silver–silver chloride cells without liquid junction. The thermodynamic quantities, G°, H°,S°, and C _p ^o have been calculated from the temperature coefficient of pK ₂. At 25°C, the pK ₂ = 8.042 and at 37°C, pK ₂ = 7.876; hence, buffer solutions of HEPPSO and NaHEPPSOate are important for pH control in the region close to that of clinical fluids (blood serum). Conventional pH values from 5 to 55°C as well as those obtained from liquid junction correction at 25 and 37°C have been reported for three buffer solutions with the compositions (molality scale): (1) equimolal mixture of HEPPSO (0.04 m) + NaHEPPSOate (0.04 m) + NaCl (0.12 m); (2) HEPPSO (0.08 m) + NaHEPPSOate (0.08 m); and (3) HEPPSO (0.08 m) + NaHEPPSOate (0.08 m) + NaCl (0.08 m).     

Application of NMR SHAPES screening to an RNA target

Several NMR screening techniques have been developed in recent years to aid in the identification of lead drug compounds. These NMR methods have traditionally been used for protein targets, and here we examine their applicability for an RNA target. We used the SHAPES compound library to test three different NMR screening methodologies: the saturation transfer difference (STD), the 2D trNOESY, and the WaterLOGSY experiments. We found that the WaterLOGSY experiment was the most sensitive method for our RNA target, the P4P6 domain of the Tetrahymena thermophila Group I intron. Using the WaterLOGSY experiment, we found that 23 of the 112 SHAPES compounds interact with P4P6. To identify which of these 23 hits bind through nonspecific interactions, we counterscreened with a linear duplex RNA control and identified one of the SHAPES compounds as interacting with P4P6 specifically. We thus demonstrated that the WaterLOGSY experiment in combination with the SHAPES compound library can be used to efficiently find RNA binding lead compounds.