Torsional isomerization of biologically active bicyclic molecules

Rotational isomerization of bipyridines C₅H₄N? C₅H₄N was studied by CNDO /2, PPP /CI , and CNDO /CI methods. It is shown that CNDO /2 overestimates the angle of rotation ? between the pyridine rings ca. two times. The angle ? was determined for 2,2′-bipyridine by means of correlation of the theoretical (CNDO /2) and experimental dipole moment. It was also found from the correlation between the theoretical and experimental UV spectra. It is shown that there is an explicit dependence of the results upon the distance between heteroatoms (PPP /CI ). It has been found that the CNDO /CI method correctly predicts the value of the rotational angles and their sequence in bipyridines.     

Comparison of the electrophilic and free-radical addition of halogens with hexafluoro-1,3-butadiene and 1,3-butadiene

Ionic and photochemical reaction of chlorine (Cl₂), bromine (Br₂) and iodine monochloride (ICl) to hexafluoro-1,3-butadiene (1) and 1,3-butadiene (2) were carried out under conditions that would provide product distributions under controlled ionic or free-radical conditions. Product distributions for ionic reaction of Cl₂ and Br₂ with 1 are similar and suggest a weakly-bridged halonium ion species. Theoretical calculations support weakly-bridged chloronium and bromonium ions for both dienes 1 and 2. There are more of the 1,4-dihalo-2-butene products from ionic halogenation of 1 than 2 which correlates with the greater charge density on carbon-4 of halonium ions from 1. Ionic and free-radical reactions of ICl with 1 give 8 and 2% of 3-chloro-4-iodohexafluoro-1-butene and 4-chloro-3-iodohexafluoro-1-butene, respectively. The minor cis-1,4-dihalo-2-butene products from 1 and 2 are reported when formed.     

Toeplitz operators in n-dimensions

The interplay between the theory of Toeplitz operators on the circle and the theory of pseudodifferential operators on the line (i. e. Wiener-Hopf operators) is by now well-known and well-understood. In this article we show that there is a parallel situation in higher dimensions. To begin with, by using pseudodifferential multipliers, one can simplify the composition rules for Toeplitz operators, (§ 3), and describe precisely how Toeplitz operators of Bergmann type are related to Toeplitz operators of Szegö type (§ 9). Furthermore, it turns out that the ring of pseudodifferential operators on a compact manifold, M, is isomorphic with the ring of Toeplitz operators on an appropriate Grauert tube about M (§ § 4–6), and the ring of Weyl operators on ⁿ is isomorphic with the ring of Toeplitz operators on the complex ball in ⁿ (§ § 7–10).     

On the origin of dynamic instability of molecular systems

The vibronic origin of dynamic instability of molecular systems considered earlier, is here given a more complete and rigorous treatment. It is shown that the nonvibronic contribution to the curvature of the adiabatic potential arising due to nuclear displacements under fixed electronic density distribution, is always positive, and hence the only reason for dynamic instability is the pseudo Jahn-Teller effect. For some examples of special interest (planar equilateral NH₃, planar square CH₄ and linear H ₃ ⁺ ) the molecular excited states, responsible for the instability of the ground state, are revealed by means of ab initio calculations.     

A versatile microfabricated platform for electrophoresis of double- and single-stranded DNA

We demonstrate a versatile microfabricated electrophoresis platform, incorporating arrays of integrated on-chip electrodes, heaters, and temperature sensors. This design allows a range of different sieving gels to be used within the same device to perform separations involving both single- and double-stranded DNA over distances on the order of 1 cm. We use this device to compare linear and cross-linked polyacrylamide, agarose, and thermo-reversible Pluronic-F127 gels on the basis of gel casting ease, reusability, and overall separation performance using a 100 base pair double-stranded DNA ladder as a standard sample. While cross-linked polyacrylamide matrices provide consistently high-quality separations in our system over a wide range of DNA fragment sizes, Pluronic gels also offer compelling advantages in terms of the ability to remove and reload the gel. Agarose gels offer good separation performance, however, additional care must be exercised to ensure consistent gel properties as a consequence of the need for elevated gel loading temperatures. We also demonstrate the use of denaturing cross-linked polyacrylamide gels at concentrations up to 19% to separate single-stranded DNA fragments ranging in size from 18 to 400 bases in length. Primers differing by 4 bases at a read length of 30 bases can be separated with a resolution of 0.9-1.0 in under 20 min. This level of performance is sufficient to conduct a variety of genotyping assays including the rapid detection of single nucleotide polymorphisms (SNPs) in a microfabricated platform. The ability to use a single microelectrophoresis system to satisfy a wide range of separation applications offers molecular biologists an unprecedented level of flexibility in a portable and inexpensive format.     

PHYTOCHROME STATES IN ETIOLATED PEA SEEDLINGS: FLUORESCENCE AND PRIMARY PHOTOREACTIONS AT LOW TEMPERATURES

Emission spectra of the red phytochrome form (Pr) and fluence time-response curves of the Pr fluorescence intensity changes were measured in etiolated pea seedlings at low temperatures (80–150 K) in connection with its phototransformations into the initial photoproduct (Lr) and back upon actinic red (667 nm) and far-red (696 nm) illumination. The variable fluorescence reaches 45% at 85 K and decreases with the rise of temperature. Three kinetic components of the changes were found in the direct (Pr→Lr) and back (Lr→Pr) photoreactions belonging to three states of phytochrome: “slow”, “fast” and “very fast” (respective indices: s, f and vf). The amplitudes of the components and rate constants to reach photoequilibrium were determined in the direct and back photoreactions at different temperatures, and from this, their quantum yields, extent of the Pr?Lr phototransformation and activation energy of the reactions were evaluated for the three Pr and Lr states. The yields differ from each other by approximately a factor of 10 and those for the direct and back photoreactions are close to each other. The proportion of the amplitudes of the variable fluorescence of the three phytochrome states changes with temperature and upon the Pr→Lr photo-transformation and the Pr states differ in the position of their emission spectra by 3–5 nm. A close similarity between the Pr and Lr properties was observed, which implies a symmetrical scheme of their photoreactions. It is suggested that the three phytochrome species may originate in different conformational states of the chromophore and they independently transform in parallel photoreactions into the respective photoproducts: Prvf?Lrvf, Prf?Lrf and Prs?Lrs.     

Synthesis, Characterization, and Electrochemistry of sigma-Bonded Cobalt Corroles in High Oxidation States

The synthesis, electrochemistry, spectroscopy, and structural characterization of two high-valent phenyl sigma-bonded cobalt corroles containing a central cobalt ion in formal +IV and +V oxidation states is presented. The characterized compounds are represented as phenyl sigma-bonded cobalt corroles, (OEC)Co(C(6)H(5)) and [(OEC)Co(C(6)H(5))]ClO(4), where OEC is the trianion of 2,3,7,8,12,13,17,18-octaethylcorrole. The electronic distribution in both molecules is discussed in terms of their NMR and EPR spectroscopic data, magnetic susceptibility, and electrochemistry.     

NMR determination of enantiomeric composition of 1-substituted 3-amino-1,2-dicarba-closo-dodecaboranes using Eu(hfc)3

Experimental conditions for determination of enantiomeric composition of 1-substituted 3-aminocarboranes by ¹H and ¹³C NMR spectroscopy using chiral shift reagent Eu(hfc)₃ have been found.     

Perchlorate analysis using solid-phase extraction cartridges

Perchlorate is a compound of increasing concern as an environmental contaminant and is being regulated at increasingly stringent levels. Reliable methods are needed to consistently analyze perchlorate at low concentration levels. This research investigates the use of solid-phase extraction cartridges as an alternative to large-volume injection loops to achieve low-level (microg/L level) perchlorate quantitation. The method involves commercially available strong anion exchange (SAX) cartridges. Water samples are filtered (100 to 1000 mL) using the cartridge, which removes the perchlorate from the solution by anion exchange. Then, after the desired volume is filtered, the perchlorate is extracted using 4 mL of 1% NaOH. In addition, a cleanup method is developed to remove competing anions (chloride, sulfate, and carbonate) that are often found in environmental samples. Analyses are performed with an ion chromatograph using a 10-microL injection loop, yielding a perchlorate method detection limit (MDL) of 210 microg/L. One-liter volumes of a 2-microg/L perchlorate spiked deionized water solution are filtered with SAX SPE. Following extraction and analysis, an MDL of 0.82 microg/L is obtained, comparable to that found for 1-mL injection loop systems (reported as low as 0.53 microg/L). MDL studies are then conducted on perchlorate-amended groundwater (solution concentration of 70 microg/L) and surface water (solution concentration of 10 microg/L) using a filtration volume of 200 mL. The MDLs are 6.7 microg/L for the groundwater and 2.4 microg/L for the surface water.     

Calculations on bound and autoionizing states,and continuum radiative properties for Li− and Na−

Semi-empirical model potential calculations have been performed for bound and continuum properties of Li^? and Na^?. The calculated electron affinities of the 2s²¹S state of Li^? and the 3s²¹S and 3p²³P^e states of Na^? are in agreement with the calculations of Norcross and with experimental data. Positions of possible autoionizing states are calculated using projection and root stabilization methods. The Stieltjes imaging method of Langhoff is employed to compute the photodetachment cross sections of Li^? and Na^? and the results are in excellent agreement with the close-coupling calculations of Moores and Norcross. A comparison of variational and numerical results for the coupled time-dependent Hartree-Fock photoionization of helium shows that good Stieltjes imaging results can be obtained with a very small basis set for the variational calculation. The continuous photoemission profile for the 3p²³P^e state of Na^? is also obtained.