Synthesis and crystal structure of [(η3-C3H5)(CO)2Mo(μ-S2CPCy3)-Mo(η3-CH2CMeCH2)(CO)2]

A novel dimolybdenum complex [(³-C₃H₅)(CO)₂Mo(-S₂CPCy₃)Mo(³-CH₂CMeCH₂)(CO)₂], obtained by reacting the [(CO)₂(³-C₃H₅)Mo(-S₂CPCy₃)Mo(CO)₃]^– anion with an excess of ClCH₂CMe=CH₂, has been characterized by i.r., ³¹P{¹H}, ¹H- and ¹³C-n.m.r. spectroscopy and by elemental analysis. The crystal structure of the complex, determined by X-ray diffraction, shows a definite preference for the central carbon of the S₂CPCy₃ bridge to bind to the Mo(2) atom coordinated by ³-2-methylallyl, rather than the Mo(1) atom attached to unsubstituted ³-allyl ligand.     

Influence of Cyclodextrins on the Kinetics of Oxidation of Amino Acids and BSA by Hydrazyl Radicals

The kinetics of oxidation of amino acids (Arg, His, Lys, Phe, Thr and Tyr), a dipeptide (Gly-His), and BSA (bovine serum albumin) by two persistent water soluble free radicals of the hydrazyl type has been studied.The rate decreases in the order Arg>Lys>Tyr>Thr>HisBSAPheGly-His with bothfree radicals. Addition to the reaction mixture of - and -cyclodextrin decreases the oxidation rate, probably due to amino acidencapsulation in the cyclodextrin cavity. -Cyclodextrin protects more efficiently against oxidation than -cyclodextrin.     

Elucidation of the initial step of oligonucleotide fragmentation in matrix-assisted laser desorption/ionization using modified nucleic acids

To probe the mechanism of gas-phase oligonucleotide ion fragmentation, modified oligonucleotides were studied using matrix-assisted laser desorption/ionization. The oligonucleotides were of the form 5'-TTTTXTTTTT, where X was a modified nucleotide. Modifications included substitution of hydroxy, methoxy, amino, and allyl groups at the 2'-position of the deoxyribose. The modified ribose contained adenine, guanine, cytosine, or uracil bases. For comparison, we studied oligomers where X was an unmodified adenosine, guanosine, cytidine, thymidine, or uridine deoxyribonucleotide. We found a very strong dependence of the matrix-to-analyte ratio on fragmentation for these oligomers. Analysis of these modifications suggests that the initial fragmentation step in MALDI-MS involves a two-step (E1) elimination of the base.     

Application of a Mixed Adsorbent for Flow TLC

JPC – Journal of Planar Chromatography – Modern TLC -     

On the influence of fatty acid chain unsaturation on supramolecular gelation of aminocarbohydrate-based supra-amphiphiles

Supramolecular gels are soft materials formed mainly by low molecular weight units held together by intermolecular interactions. Stabilizing these kinds of materials is quite a challenge due to the influence of multiple factors interfering with the integrity of the supramolecular structure. In our previous studies, we have shown that the aminocarbohydrate meglumine (MEG) interacts with organic acids by ion-pairing leading to the formation of MEG–carboxylate adducts. These adducts undergo supramolecular polymerization by heat treatment, but the macromolecular assembly was stable for a short period due to hydrogen bond (H-bond) breakup. Herein, we attempt to study the influence of hydrophobic building blocks on the formation of these compounds aiming to stabilize H-bonds to produce polymerizable supra-amphiphiles in water. Oleic acid and stearic acid are two analogous fatty acids differing only in the presence of unsaturation that were used in our studies. Results demonstrated that the presence of unsaturation hinders gelation in water by interfering with the self-assembly behavior of supra-amphiphiles. Thus, unsaturated supra-amphiphiles behave like traditional surfactants and gelify water at high concentrations (above 30% w/w). On the other hand, supramolecular gels with a polymer-like behavior could be produced with a saturated supra-amphiphile in water (above 4% w/w). The material was characterized by a lamellar arrangement that facilitates the alignment of H-bonds necessary to stabilize the self-assembled structure. These results have pivotal importance on the design of polymerizable supra-amphiphiles and demonstrate that the double bond of hydrophobic building blocks is an important design factor to be considered by scientists studying similar materials.     

HTMoL: full-stack solution for remote access,visualization, and analysis of molecular dynamics trajectory data

Research on biology has seen significant advances with the use of molecular dynamics (MD) simulations. The MD methodology enables explanation and discovery of molecular mechanisms in a wide range of natural processes and biological systems. The need to readily share the ever-increasing amount of MD data has been hindered by the lack of specialized bioinformatic tools. The difficulty lies in the efficient management of the data, i.e., in sending and processing 3D information for its visualization. In this work, we present HTMoL, a plug-in-free, secure GPU-accelerated web application specifically designed to stream and visualize MD trajectory data on a web browser. Now, individual research labs can publish MD data on the Internet, or use HTMoL to profoundly improve scientific reports by including supplemental MD data in a journal publication. HTMoL can also be used as a visualization interface to access MD trajectories generated on a high-performance computer center directly. Furthermore, the HTMoL architecture can be leveraged with educational efforts to improve learning in the fields of biology, chemistry, and physics.     

Poly(β-pinenes) carrying one,two, or three functional end groups. I. The effect of reaction conditions on the polymerization of β-pinene

β-Pinene was polymerized with H₂O/BCl₃ (protic) and p-dicumyl chloride and sym-tricumyl chloride (nonprotic) inifer systems in CH₂Cl₂ or CH₂Cl₂/n-C₆H₁₄ solvents from ?10 to ?70°C. The effect of solvent polarity, temperature, and monomer and inifer concentration on conversions and molecular weights was investigated. Low conversions and molecular weights, M?_n = 1300–2500, obtained under these conditions suggest rapid termination.     

Synthesis,characterization and antitumor activity of palladium(II) complexes of imidazolidine-2-thione

Complexes of the type cis-[PdX₂(imzt)(PPh₃)] {imzt = imidazolidine-2-thione; PPh₃ = triphenylphosphine; X = Cl (1), Br (2), I (3), SCN (4)} have been synthesized and characterized by elemental analyses, molar conductance, IR and ¹H NMR spectroscopies. The complex 1·MeOH was obtained from the reaction of [PdCl₂(CH₃CN)₂], imidazolidine-2-thione and triphenylphosphine in CHCl₃/CH₃OH. Complexes 2·MeOH, 3 and 4 were prepared by metathesis of the chlorido ligands in 1 with bromide, iodide and thiocyanate, respectively. Elemental analyses showed good agreement with the expected mononuclear compositions, while the molar conductivities of the complexes in DMF were consistent with their nonelectrolytic nature. NMR spectra confirmed coordination of the imidazolidine-2-thione and triphenylphosphine ligands. Single-crystal X-ray diffraction determination of 1·CH₃OH showed that the coordination geometry around Pd^II is nearly square planar, with the chlorido ligands in a cis configuration. All four complexes have been tested in vitro by XTT assay for their cytotoxicity against human glioblastoma cell line (U87MG). The binding of 1 with guanosine was studied by ¹H NMR spectroscopy, revealing that the coordination takes place via N7.     

On the behaviour of Eu oxo-species in molten NaBr–NaI (0.77:0.23) mixture at 973 K

The interaction of Eu₂O₃ with molten NaBr–NaI (0.77:0.23) mixture at 973 K was studied by sequential addition method with the use of YSZ membrane oxygen electrode for controlling of course of the process. The Red-Ox process is accompanied with formation of EuO in the melt. The total solubility of EuO (sum of concentration of Eu²⁺, O^2–, non-dissociated EuO) in the molten NaBr–NaI at 973 K (mole fraction 2.7 × 10^–4) is considerably lower than in pure NaI melt (4.2 × 10^–4), which can be explained using the ‘hole’ model by reduction of a number of holes of comparable with EuO particle size because of addition of smaller bromide ion to the iodide melt.

The solubility of EuO is appreciably affected by its dispersity and the value of surface energy causing these solubility changes is estimated as 37 J m^–2.