Molecular mobility of nitroxide spin probes in glassy polymers. Quasi‐libration model

ESR spectra of three spin probes with different molecular volumes: 2,2,6,6‐tetramethyl‐4‐oxopiperidine‐1‐oxyl, di‐p‐anisylnitroxide, and nitroxide derivative of fullerene in glassy polystyrene, polyvinyl trimethylsilane, and Teflon AF‐2400 were calculated numerically within the model of quasi‐libration motions. Temperature ranges, where the model is capable to reproduce spectra within experimental errors, were defined. It was found that simulation of X‐band ESR spectra allows to determine quasi‐libration amplitudes around molecular axes X and Y with accuracy ～ 3° and around Z axis with accuracy ～ 15–20°. A shape of distribution of quasi‐libration amplitudes was also determined qualitatively by ESR spectra simulations. It was established that the average amplitude of quasi‐libration motion depends on the free volume of each polymer and geometrical molecular volume of a spin probe. Quasi‐libration amplitudes increase as the temperature increases, and reach the value of 40 degrees. We found that upon further temperature increase, quasi‐libration model becomes inapplicable for quantitative numerical spectra simulation. © 2008 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 47: 107–120, 2009     

Application of Precipitation-based and Nanoparticle-based Techniques for Fabrication of Potentiometric Sensors for Nano Molar Determination of Chitosan and Polyvinyl Pyrrolidone in Pharmaceutical Formulations and Biological Fluids

Chitosan (CH) is one of the most abundant biopolymers with multiple applications. Polyvinyl pyrrolidone (PVP) has specific binding and detoxification properties that are of great interest in health care. Hence, it arises a crucial urge to develop economic sensors to analyze CH and PVP in pharmaceutical formulations and biological samples. Two portable sensors were fabricated using precipitation-based technique, and nanoparticles-based technique, for determination of CH and PVP in sensor 1 and 2; respectively. Linear responses of 10⁻⁵ to10⁻⁷ M and 10⁻² to10⁻⁷ M at pH 3.6–4.8 and 7.2–8.4, with ideal Nernstian slopes of 60.00 and 59.83 mV /decade, and nanomolar LODs of 94.90 and 81.20 nM were observed for CH and PVP; respectively. The percentage recoveries were 100.40±1.03 and 100.19±0.64 for sensors 1 and 2; respectively. Both sensors were successfully applied in biological fluids without pre-treatment. Accurate results were obtained using sensor 1, in pure form, pharmaceutical formulations, human plasma, rat liver and rat brain, as well as sensor 2, in pure form, pharmaceutical formulations and urine samples. The results were statistically compared with the reported methods and no significant difference was observed.     

Screening and separation of charges in microscale devices: complete planar solution of the Poisson-Boltzmann equation

The Poisson-Boltzmann (PB) equation is widely used to calculate the interaction between electric potential and the distribution of charged species. In the case of a symmetrical electrolyte in planar geometry, the Gouy-Chapman (GC) solution is generally presented as the analytical solution of the PB equation. However, we demonstrate here that this GC solution assumes the presence of a bulk region with zero electric field, which is not justified in microdevices. In order to extend the range of validity, we obtain here the complete numerical solution of the planar PB equation, supported with analytical approximations. For low applied voltages, it agrees with the GC solution. Here, the electric double layers fully absorb the applied voltage such that a region appears where the electric field is screened. For higher voltages (of order 1 V in microdevices), the solution of the PB equation shows a dramatically different behavior, in that the double layers can no longer absorb the complete applied voltage. Instead, a finite field remains throughout the device that leads to complete separation of the charged species. In this higher voltage regime, the double layer characteristics are no longer described by the usual Debye parameter kappa, and the ion concentration at the electrodes is intrinsically bound (even without assuming steric interactions). In addition, we have performed measurements of the electrode polarization current on a nonaqueous model electrolyte inside a microdevice. The experimental results are fully consistent with our calculations, for the complete concentration and voltage range of interest.     

Generation current of charged micelles in nonaqueous liquids: measurements and simulations

Electrically charged species in nonaqueous media still hold many questions. Recent studies and applications show the need for a better understanding of the origin and nature of these charged species. Transient current measurements have been used to study the conductivity of nonaqueous liquid containing charged inverse micelles. At small time scales (1-100 ms) drift and diffusion of charged species are the main contributions to the measured current. At larger timescales (above 1 s) a nonzero quasi steady-state current at high voltages (above 0.5 V) remains. This indicates that besides drift and diffusion an additional process occurs. The dependence of the quasi steady-state current on the applied voltage, micelle concentration, and device thickness has been investigated. Experimental results have been compared to simulations and analytical calculations. It is concluded that the quasi steady-state current results from a bulk disproportionation reaction between neutral micelles that generates charged micelles. And therefore this technique allows for direct quantification of the reaction kinetics from which the charged species originate.     

UV LASER INDUCED RNA-PROTEIN CROSSLINKS AND RNA CHAIN BREAKS IN TOBACCO MOSAIC VIRUS RNA in situ

The efficiency of RNA-protein crosslink and RNA chain break formation under nanosecond or picosecond UV-laser pulse irradiation of tobacco mosaic virus was determined. It was found that on high-intensity UV-laser irradiation the quantum yields of both reactions increase considerably as compared to the usual (low-intensity) UV-irradiation. The RNA-protein crosslink quantum yield was found to be 1.8 x 10(-5) and 1.2 x 10(-4) and that of RNA chain breaks 1.7 x 10(-4) and 8.9 x 10(-4) for nanosecond and picosecond irradiation, respectively.     

A structural view of the inactivation of the SARS coronavirus main proteinase by benzotriazole esters

The main proteinase (M(pro)) of the severe acute respiratory syndrome (SARS) coronavirus is a principal target for the design of anticoronaviral compounds. Benzotriazole esters have been reported as potent nonpeptidic inhibitors of the enzyme, but their exact mechanism of action remains unclear. Here we present crystal structures of SARS-CoV M(pro), the active-site cysteine of which has been acylated by benzotriazole esters that act as suicide inhibitors. In one of the structures, the thioester product has been hydrolyzed and benzoic acid is observed to bind to the hydrophobic S2 pocket. This structure also features the enzyme with a shortened N-terminal segment ("amputated N finger"). The results further the understanding of the important role of the N finger for catalysis as well as the design of benzotriazole inhibitors with improved specificity.     

Charge Transfer Complex Role in the Formation of Chlorobenzene in the γ‐Irradiated Carbon Tetrachloride‐Benzene System

The formation of carbon tetrachloride‐benzene charge transfer complex was confirmed by UV and NMR spectrometric studies. A change in UV spectrum of benzene is observed upon addition of carbon tetrachloride. Whereas the appearance of new bands supports the formation of charge transfer complex. NMR study shows that, chemical shift of benzene pmr signal depends on the CCl₄‐C₆H₆ molar ratio. This observation is another criterion for the formation of benzene‐carbon tetrachloride charge transfer complex. Job's Continuous Variation method indicates that a 2:1 CCl₄‐C₆H₆ charge transfer complex (2:1 CTC) is formed. The association constants (K_2:1) of (2:1 CTC) was found to be 0.0197 M^?2. The maximum concentration of (2:1 CTC) was found to be in samples with 2:1 CCl₄‐C₆H₆ molar ratio (33% benzene mole). On the other hand the maximum yield of chlorobenzene was obtained, also, upon radiolysis of CCl₄‐C₆H₆ samples at a 2:1 molar ratio (33% benzene mole). Therefore, it could be concluded that (2:1 CTC) participates in the formation of chlorobenzene upon radiolysis of the benzene‐carbon tetrachloride system. This conclusion was supported by the dependence of the chlorobenzene yield of a γ‐irradiated carbon tetrachloride‐benzene system (2:1 molar ratio) on irradiation time according to a third order kinetic equation with a very good linearity (R² = 0.9977). Accordingly, the rate constant for the chlorobenzene formation under this condition was found to be ≈ 5.5 × 10^?7 L².mol^?2.h^?1. We propose a radiation chemical mechanism in which the 2:1 CTC plays a role in the formation of chlorobenzene.     

Monte Carlo algorithm for drift and diffusion of ions in anisotropic,non-homogeneous media

A new Monte Carlo algorithm for ion transport in two-dimensional anisotropic media is reported. It is based on physical considerations of drift and diffusion in anisotropic media with or without an impermeable boundary. Inhomogeneities in the medium and electric field can be taken into account by averaging along the ion trajectory. The algorithm has been applied to the calculation of ion transport in liquid crystal displays and has been successfully compared with a finite difference program on a one-dimensional liquid crystal structure.