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101.
Limiting the Number of Potential Binding Modes by Introducing Symmetry into Ligands: Structure‐Based Design of Inhibitors for Trypsin‐Like Serine Proteases 下载免费PDF全文
Norbert Furtmann Daniela Häußler Tamara Scheidt Dr. Marit Stirnberg Prof. Dr. Torsten Steinmetzer Prof. Dr. Jürgen Bajorath Prof. Dr. Michael Gütschow 《Chemistry (Weinheim an der Bergstrasse, Germany)》2016,22(2):610-625
In the absence of X‐ray data, the exploration of compound binding modes continues to be a challenging task. For structure‐based design, specific features of active sites in different targets play a major role in rationalizing ligand binding characteristics. For example, dibasic compounds have been reported as potent inhibitors of various trypsin‐like serine proteases, the active sites of which contain several binding pockets that can be targeted by cationic moieties. This results in several possible orientations within the active site, complicating the binding mode prediction of such compounds by docking tools. Therefore, we introduced symmetry in bi‐ and tribasic compounds to reduce conformational space in docking calculations and to simplify binding mode selection by limiting the number of possible pocket occupations. Asymmetric bisbenzamidines were used as starting points for a multistage and structure‐guided optimization. A series of 24 final compounds with either two or three benzamidine substructures was ultimately synthesized and evaluated as inhibitors of five serine proteases, leading to potent symmetric inhibitors for the pharmaceutical drug targets matriptase, matriptase‐2, thrombin and factor Xa. This study underlines the relevance of ligand symmetry for chemical biology. 相似文献
102.
103.
Daniela Nedeltcheva Vanya Kurteva Ivanka Topalova 《Rapid communications in mass spectrometry : RCM》2010,24(6):714-720
The tautomeric constants of a series of azo dyes were estimated in the gas phase by using electron ionization mass spectrometry. It was shown that the relative amount of the keto tautomer increases from 4‐phenylazo‐1‐phenol to 4‐phenylazo‐anthracen‐1‐ol, thus confirming the quantum‐chemical predictions. The existence of the enol tautomer of 4‐phenylazo‐anthracen‐1‐ol is shown for the first time by mass spectrometry in the gas phase. This finding is supported by flash photolysis measurements in solution. Copyright © 2010 John Wiley & Sons, Ltd. 相似文献
104.
Gehanne S Cecconi D Carboni L Righetti PG Domenici E Hamdan M 《Rapid communications in mass spectrometry : RCM》2002,16(17):1692-1698
We describe a simple approach for the relative quantification of individual proteins within a mixture. The method is based on the differential labelling of the mixtures by use of a commercially available acrylamide and deuterium-labelled [2,3,3'-d(3)]-acrylamide to alkylate proteins prior to two-dimensional (2-D) gel electrophoresis. The tryptic digests of the separated proteins were subjected to reflector matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) analysis and the relative peak heights of cysteine-containing peptides were used to quantify their precursor proteins. This approach was tested for the relative quantification of proteins within an artificial mixture of standard proteins and for proteins observed in a 2-D map of rat serum. A good correlation was found between the measured ratios derived from MALDI-TOF data and those theoretically calculated prior to 2-D analysis via known mixing ratios of the two alkylating reagents. The described procedure has proved to be effective for comparative measurements of protein abundances within the investigated mixtures. 相似文献
105.
The direct formation of alpha-methylene-beta-amino acid derivatives is achieved using the aza version of the Baylis-Hillman protocol. The products are readily formed in a three-component one-pot reaction between arylaldehydes, sulfonamides, and alpha,beta-unsaturated carbonyl compounds. The reaction is efficiently catalyzed by titanium isopropoxide and 2-hydroxyquinuclidine in the presence of molecular sieves. The protocol allows for structural variation of the substrates, tolerating electron-poor and electron-rich arylaldehydes and various Michael acceptors. 相似文献
106.
107.
Carolina Muscoli Daniela Salvemini Donatella Paolino Michelangelo Iannone Ernesto Palma Antonio Cufari Domenicantonio Rotiroti Federico Carlo Perno Stefano Aquaro Vincenzo Mollace 《BMC neuroscience》2002,3(1):13-8
Background
Oxidative stress has shown to contribute in the mechanisms underlying apoptotic cell death occuring in AIDS-dementia complex. Here we investigated the role of peroxynitrite in apoptosis occurring in astroglial cells incubated with supernatants of HIV-infected human primary macrophages (M/M). 相似文献108.
In this paper, we prove higher integrability results for the gradient of the solutions of some elliptic equations with degenerate
coercivity whose prototype is
where for example, a(x,u)=(1+|u|)−θ with θ ∈ (0,1). We study the same problem for minima of functionals closely related to the previous equation. 相似文献
109.
Jörg Krüger Daniela Dufft Robert Koter Andreas Hertwig 《Applied Surface Science》2007,253(19):7815-7819
Single- and multi-shot ablation thresholds of gold films in the thickness range of 31-1400 nm were determined employing a Ti:sapphire laser delivering pulses of 28 fs duration, 793 nm center wavelength at 1 kHz repetition rate. The gold layers were deposited on BK7 glass by an electron beam evaporation process and characterized by atomic force microscopy and ellipsometry. A linear dependence of the ablation threshold fluence Fth on the layer thickness d was found for d ≤ 180 nm. If a film thickness of about 180 nm was reached, the damage threshold remained constant at its bulk value. For different numbers of pulses per spot (N-on-1), bulk damage thresholds of ∼0.7 J cm−2 (1-on-1), 0.5 J cm−2 (10-on-1), 0.4 J cm−2 (100-on-1), 0.25 J cm−2 (1000-on-1), and 0.2 J cm−2 (10000-on-1) were obtained experimentally indicating an incubation behavior. A characteristic layer thickness of Lc ≈ 180 nm can be defined which is a measure for the heat penetration depth within the electron gas before electron-phonon relaxation occurs. Lc is by more than an order of magnitude larger than the optical absorption length of α−1 ≈ 12 nm at 793 nm wavelength. 相似文献
110.
A. Baldan Adriaan M. H. van der Veen Daniela Prauß Angelika Recknagel N. Boley Steve Evans Derek Woods 《Accreditation and quality assurance》2001,6(4-5):164-167
Many proficiency tests are operated with a consensus value derived from the participants’ results. Apart from technical issues,
one of the reasons often mentioned is that proficiency tests operated with consensus values would be cheaper than those using
reference values obtained from a priori characterisation measurements. The economy of a proficiency test must of course be balanced by the need of the participants,
and the quality of the comparison in general. The proficiency tests selected in this study had both a reference value and
a consensus value, one of which was used for assessing the performance of the participating laboratories. In this work, both
a technical and an economical assessment of how the comparisons were operated is made. From the evaluation, it follows that
usually the use of consensus values does not necessarily reduce the costs of a proficiency test. However, frequently it may
be observed that the quality of the assessment of the laboratories is better with a reference value.
Received: 11 October 2000 Accepted: 3 January 2001 相似文献