The anomalous spectral dependence of polarization in comets

We have found an anomalous (negative) spectral dependence of polarization for split comet 73P/Schwassmann–Wachmann 3, i.e. polarization degree in the I filter is systematically less (4%) than that in the R filter for both B and C subnuclei of the comet. Earlier we revealed a similar effect for comets 21P/Giacobini–Zinner, C/1999 S4 (LINEAR), and 9P/Tempel 1. Together with comet C/1989 X1 (Austin), for which the similar spectral dependence of polarization was also observed, these comets form a group characterized by some peculiar properties of their dust. Since atypical organic composition is a characteristic feature for all these comets, the anomalous spectral dependence of polarization may indicate specifics of origin of these comets. Really, most of these comets (but not all) originated from the Kuiper Belt. Also, most (but not all) of these comets belong to the group of comets depleted in carbon species in the gas phase, which is typical for comets formed in the giant-planet area of the solar system. On the other hand, all of the comets with negative spectral gradient of polarization have the dust dominated by large particles and most of them belong to the Jupiter family. This may indicate that anomalous spectral dependence of their polarization is a result of their evolution. To identify the reason of anomalous polarization, systematic spectropolarimetric observations of Jupiter-family comets are necessary.     

Attaching tweezers like ionophore to a proton crane: theoretical design of new tautomeric sensors

ABSTRACT

The tautomeric optical sensors based on 4-(phenyldiazenyl)naphthalen-1-ol exist in their pure enol tautomeric form as free ligands, while the addition of metal ion fully shifts the equilibrium towards the keto tautomer allowing a red shift in the measured absorbance. This effect is achieved when a side ionophore group is connected to a tautomeric backbone by a spacer in a way that stabilizes the enol form via hydrogen boding. When the ionophore captures the metal ion the keto form is stabilized due to C─O tautomeric group participation in the complex. In the current study, we model theoretically the effect of symmetric tweezer like ionophores (RCOXCOR, where X, being CH or N, is the linker to the tautomeric backbone) on the tautomeric state and complexation ability of 4-(phenyldiazenyl)naphthalen-1-ol containing ligands. It was found that enol form stabilisation is achieved when R?=?NMe₂, independing on the linker. Both ligands are unsuitable for capturing alkali metal ions. The calculations predict that the complexation with alkali earth metal ions could lead to a full shift of the tautomeric equilibrium towards keto tautomer.     

Chemically and Biologically Harmless versus Harmful Ferritin/Copper–Metallothionein Couples

The simultaneous measurement of the decrease of available Fe^II ions and the increase of available Fe^III ions allowed the analysis of the ferroxidase activity of two distinct apoferritins. Although recombinant human apoferritin (HuFtH) rapidly oxidizes Fe^II to Fe^III, this iron is not properly stored in the ferritin cavity, as otherwise occurs in horse‐spleen H/L‐apoferritin (HsFt; H=heavy subunit, L=light subunit). Iron storage in these apoferritins was also studied in the presence of two copper‐loaded mammalian metallothioneins (MT2 and MT3), a scenario that occurs in different brain‐cell types. For HuFtH, unstored Fe^III ions trigger the oxidation of Cu–MT2 with concomitant Cu^I release. In contrast, there is no reaction with Cu–MT2 in the case of HsFt. Similarly, Cu–MT3 does not react during either HuFtH or HsFt iron reconstitution. Significantly, the combination of ferritin and metallothionein isoforms reported in glia and neuronal cells are precisely those combinations that avoid a harmful release of Fe^II and Cu^I ions.     

Investigation of Sequence Clipping and Structural Heterogeneity of an HIV Broadly Neutralizing Antibody by a Comprehensive LC-MS Analysis

CAP256 is one of the highly potent, broadly neutralizing monoclonal antibodies (bNAb) designed for HIV-1 therapy. During the process development of one of the constructs, an unexpected product-related impurity was observed via microfluidics gel electrophoresis. A panel of complementary LC-MS analyses was applied for the comprehensive characterization of CAP256 which included the analysis of the intact and reduced protein, the middle-up approach, and a set of complementary peptide mapping techniques and verification of the disulfide bonds. The designed workflow allowed to identify a clip within a protruding acidic loop in the CDR-H3 region of the heavy chain, which can lead to the decrease of bNAb potency. This characterization explained the origin of the additional species reflected by the reducing gel profile. An intra-loop disulfide bond linking the two fragments was identified, which explained why the non-reducing capillary electrophoresis (CE) profile was not affected. The extensive characterization of CAP256 post-translational modifications was performed to investigate a possible cause of CE profile complexity and to illustrate other structural details related to this molecule’s biological function. Two sites of the engineered Tyr sulfation were verified in the antigen-binding loop, and pyroglutamate formation was used as a tool for monitoring the extent of antibody clipping. Overall, the comprehensive LC-MS study was crucial to (1) identify the impurity as sequence clipping, (2) pinpoint the clipping location and justify its susceptibility relative to the molecular structure, (3) lead to an upstream process optimization to mitigate product quality risk, and (4) ultimately re-engineer the sequence to be clip-resistant.

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Graphical Abstract ?

     

Interrupted Baeyer–Villiger Rearrangement: Building A Stereoelectronic Trap for the Criegee Intermediate

The instability of hydroxy peroxyesters, the elusive Criegee intermediates of the Baeyer–Villiger rearrangement, can be alleviated by selective deactivation of the stereoelectronic effects that promote the 1,2‐alkyl shift. Stable cyclic Criegee intermediates constrained within a five‐membered ring can be prepared by mild reduction of the respective hydroperoxy peroxyesters (β‐hydroperoxy‐β‐peroxylactones) which were formed in high yields in reaction of β‐ketoesters with BF₃?Et₂O/H₂O₂.     

On the complexity of linear programming under finite precision arithmetic

In this paper we study the complexity of solving linear programs in finite precision arithmetic. This is the normal setup in scientific computation, as digital computers work in finite precision. We analyze two aspects of the complexity: one is the number of arithmetic operations required to solve the problem approximately, and the other is the working precision required to carry out some critical computations safely. We show how the conditioning of the problem instance affects the working precision required and the computational requirements of a classical logarithmic barrier algorithm to approximate the optimal value of the problem within a given tolerance. Our results show that these complexity measures depend linearly on the logarithm of a certain condition measure. We carry out the analysis by looking at how well Newton's Method can follow the central trajectory of the feasible set, and computing error bounds in terms of the condition measure. These results can be interpreted as a theoretical indication of good numerical behavior of the logarithmic barrier method, in the sense that a problem instance twice as hard as the other from the numerical point of view, requires only at most twice as much precision to be solved. © 1998 The Mathematical Programming Society, Inc. Published by Elsevier Science B.V.This research has been supported through grants from Fundación Andes, under agreement C12021/7, and FONDECYT (project number 1930948).     

Alkaloids induce programmed cell death in bloodstream forms of trypanosomes (Trypanosoma b. brucei)

The potential induction of a programmed cell death (PCD) in Trypanosoma b. brucei by 55 alkaloids of the quinoline, quinolizidine, isoquinoline, indole, terpene, tropane, steroid, and piperidine type was studied by measuring DNA fragmentation and changes in mitochondrial membrane potential. For comparison, the induction of apoptosis by the same alkaloids in human leukemia cells (Jurkat APO-S) was tested. Several alkaloids of the isoquinoline, quinoline, indole and steroidal type (berberine, chelerythrine, emetine, sanguinarine, quinine, ajmalicine, ergotamine, harmine, vinblastine, vincristine, colchicine, chaconine, demissidine and veratridine) induced programmed cell death, whereas quinolizidine, tropane, terpene and piperidine alkaloids were mostly inactive. Effective PCD induction (EC(50) below 10 microM) was caused in T. brucei by chelerythrine, emetine, sanguinarine, and chaconine. The active alkaloids can be characterized by their general property to inhibit protein biosynthesis, to intercalate DNA, to disturb membrane fluidity or to inhibit microtubule formation.     

Experimental and Theoretical Structure Elucidation of the [2 : 1] Complex Ion of Carbo[n]helicene with n=6, 7 and 8 and Ag+

Gas-phase complexes of [n]helicenes with n=6, 7 and 8 and the silver(I) cation are generated utilizing electrospray ionization mass spectrometry (ESI-MS). Besides the well-established [1 : 1] helicene/Ag⁺-complex in which the helicene provides a tweezer-like surrounding for the Ag⁺, there is also a [2 : 1] complex formed. Density functional theory (DFT) calculations in conjunction with energy-resolved collision-induced dissociation (ER-CID) experiments reveal that the second helicene attaches via π-π stacking to the first helicene, which is part of the pre-formed [1 : 1] tweezer complex with Ag⁺. For polycyclic aromatic hydrocarbons (PAHs) of planar structure, the [2 : 1] complex with silver(I) is typically structured as an Ag⁺-bound dimer in which the Ag⁺ would bind to both PAHs as the central metal ion (PAH–Ag⁺–PAH). For helicenes, the Ag⁺-bound dimer is of similar thermochemical stability as the π-π stacked dimer, however, it is kinetically inaccessible. Coronene (Cor) is investigated in comparison to the helicenes as an essentially planar PAH. In analogy to the π-π stacked dimer of the helicenes, the Cor−Ag⁺−Cor−Cor complex is also observed. Competition experiments using [n]helicene mixtures reveal that the tweezer complexes of Ag⁺ are preferably formed with the larger helicenes, with n=6 being entirely ignored as the host for Ag⁺ in the presence of n=7 or 8.