Towards a black‐box for biological EXAFS data analysis. II. Automatic BioXAS Refinement and Analysis (ABRA)

In biological systems, X‐ray absorption spectroscopy (XAS) can determine structural details of metal binding sites with high resolution. Here a method enabling an automated analysis of the corresponding EXAFS data is presented, utilizing in addition to least‐squares refinement the prior knowledge about structural details and important fit parameters. A metal binding motif is characterized by the type of donor atoms and their bond lengths. These fit results are compared by bond valance sum analysis and target distances with established structures of metal binding sites. Other parameters such as the Debye–Waller factor and shift of the Fermi energy provide further insights into the quality of a fit. The introduction of mathematical criteria, their combination and calibration allows an automated analysis of XAS data as demonstrated for a number of examples. This presents a starting point for future applications to all kinds of systems studied by XAS and allows the algorithm to be transferred to data analysis in other fields.     

Nonenzymatic glucose sensing at ruthenium dioxide–poly(vinyl chloride)–Nafion composite electrode

Development of nonenzymatic glucose sensors with high reproducibility and stability is an urgent need to reduce cost of regular diabetic monitoring. Here, we have fabricated ruthenium dioxide–poly(vinyl chloride)–Nafion (RuO₂–PVC–Nafion) composite for direct glucose sensing in sodium hydroxide and phosphate buffer nonenzymatically for the first time. The restricted activity of the RuO₂–PVC film electrode in alkaline pH is extended to neutral pH using Nafion as an outer membrane, which reduces the distance between Ru active sites by bridging effect and improves the electrode stability. The catalytic rate, measured in terms of change of RuO₂ resistance, is similar irrespective of the medium for the high temperature annealed RuO₂ (700 °C), whereas the low temperature annealed RuO₂ (300 °C) is highly sensitive for the change in the pH of the solution. This is revealed by observing large Michaelis–Menten kinetic constant K _M for the RuO₂ (700 °C) than the low temperature annealed RuO₂ (300 °C) due to effective increase in the catalytic active sites similar to oxygen evolution reaction. Contrast to this, the buffer solution does not influence significantly the apparent K _M observed for RuO₂ (300 °C) and has greater impact on the high temperature 500 and 700 °C annealed RuO₂ samples. Cyclic voltammetry, chrono amperommetry, and electrochemical impedance spectroscopy, scanning electron microscopy, Fourier transform infrared spectroscopy, and X-ray diffraction techniques are used for characterization of the sensor behavior. The RuO₂–PVC–Nafion senses glucose selectively in the presence of potential interferences like fructose, galactose, mannose, sucrose, starch, uric acid, ascorbic acid, dopamine, and catechol in NaOH and phosphate buffer. Glucose sensing in the blood serum of the diabetic and nondiabetic patients is made. The results suggest that the RuO₂–PVC–Nafion is a promising candidate for the development of nonenzymatic glucose sensors.     

Rapid Biosynthesis of Silver Nanoparticles Using Areca Nut (Areca catechu) Extract Under Microwave-Assistance

In this research paper, we report on the rapid synthesis of silver nanoparticles using dried areca nut (Areca catechu). The microwave exposed aqueous areca nut powder when treated with the aqueous silver salt solution yielded irregular shaped silver nanoparticles. The formation and morphology of the nanoparticles are studied using UV–visible spectroscopy, field emission scanning electron microscopy, transmission electron microscopy and atomic force microscopy. The X-ray diffraction studies and energy dispersive X-ray analysis indicate that the particles are crystalline in nature. The understanding of capping of biological moiety is derived from Fourier transform infrared spectroscopy and the thermogravimetric analysis. The green chemistry approach for the synthesis of silver nanoparticles is modest, amenable for large scale commercial production. Further the biologically synthesized silver nanoparticles are known for their potential antibacterial activity.     

Minimum detectable activity, systematic uncertainties, and the ISO 11929 standard

The Currie formulation for minimum detectable activity (MDA) has served for decades as the standard method for estimating radiological detection limits-it is simple and statistically defendable. It does, however, lack a means to account for the effects of systematic uncertainties. In recent years we have seen various efforts to incorporate systematic uncertainties into an MDA framework. Perhaps most notable of these is the recent ISO standard 11929 for the determination of characteristic limits in ionizing radiation measurements. This standard brings a Bayesian perspective to the problem of characteristic limits in radiation measurements that are in many ways both welcome and long overdue. In this paper, however, we note some apparent drawbacks to the ISO 11929 approach. Namely, for small values of the systematic uncertainty the correction it makes to the Currie MDA is negligible, while for large systematic uncertainties the calculated MDA values can become infinite. In between these two extremes, the user has little basis for evaluating the reliability of the result. To address these issues, we consider the problem from a new approach, developing a straightforward phenomenological statistical model of the MDA that treats systematic uncertainties explicitly. We compare predictions from our model with results of the ISO 11929 formulation as well as the traditional Currie approach. Finally, some recommendations for alternative handling of the MDA in the face of significant systematic uncertainties are presented.     

Binary Metal Oxide Adsorbed Graphene Modified Glassy Carbon Electrode for Detection of Riboflavin

Tungsten oxide (W) decorated titanium oxide (T) adsorbed onto a graphene (Gr) and modified the glassy carbon electrode for the electrochemical quantification of riboflavin (RF) in edible food and pharmaceuticals. For comparison, nanocomposites are formed using graphene oxide (GO), reduced graphene oxide (rGO) and pure graphite (G) sheets to study the electrochemical activities towards riboflavin. The ternary WTGr modified GCE shows the highest electrocatalytic activity due to synergetic interactions between the metal oxide and graphene. The electrochemical observations are supported by the SEM, HRTEM, XRD, UV-Vis, Zeta potential (ζ) and size data. The sensor shows a wide linear range 20 nM–2.5 μM with a detection limit 25.24 nM and sensitivity (4.249×10⁻⁸ A/nM). The fabricated sensor is validated in real samples.     

Synthesis of Nordstrandite and Nordstrandite-Derived Layered Double Hydroxides of Li and Al: A Comparative Study with the Bayerite Counterpart

The layered double hydroxides (LDHs) of Li and Al can be synthesized from the four polymorphs of Al(OH)₃, namely gibbsite, bayerite, nordstrandite, and doyleite. The crystal structure of this class of compounds depends on the type of the precursor used due to their topotactic reaction mechanism. While the LDHs derived from gibbsite and bayerite yield different crystal structures, the incorporation of Li into nordstrandite was expected to yield new LDH structures different from those derived from gibbsite and bayerite. The structure of nordstrandite derived LDHs were however identical to that derived from the bayerite counterpart. The absence of symmetry in the interlayer of nordstrandite (C₁) makes it unsuitable to accommodate the intercalating anions with different molecular symmetries. To make the interlayer gallery suitable for the anions, the metal hydroxide layers of the nordstrandite translate, transforming nordstrandite to bayerite. The bayerite with site symmetries O_h and C₂ stabilizes the anions in the interlayer by hydrogen bonding. The transformation of nordstrandite to bayerite, when soaked in lithium salt solution is, therefore, a manifestation of the intercalating anions.     

Alkylation of catechol with methanol to guaiacol over sulphate-modified zirconia solid acid catalysts

A series of sulphate-promoted ZrO₂ solid acid catalysts with different contents of SO₄ ²⁻ were calcined at 450°C in air for 4 h and tested for the liquid-phase alkylation of catechol to guaiacol in a fixed-bed down-flow reactor. The 5 wt.% SO₄ ²⁻ on ZrO₂ showed the best conversion (82%) and selectivity for guaiacol (84%) at 200°C and 1 bar pressure. A smooth correlation was observed between the catalytical activity and surface acidity of sulphated zirconia. Based on our results, a surface mechanism is proposed.     

Grain Boundary Sliding and Slip Transmission in High Purity Aluminum

Despite its significance in polycrystalline materials, there have been few experimental investigations of the activity of grain boundary sliding (GBS) and the relationship between GBS and slip transmission at grain boundaries. The present work addresses this knowledge gap by the characterization of full-field strain and microstructural information in an experimental system of high-purity (99.99%) columnar aluminum subjected to uniaxial tension at 190 °C. High-resolution, full-gage strain fields were characterized on an unloaded specimen by distortion-corrected and stitched scanning electron microscope-enabled digital image correlation (SEM-DIC). Alignment between the lower-resolution electron backscatter diffraction (EBSD) and higher-resolution strain fields was significantly improved by clustering of strain data within an EBSD-defined boundary mantle. Grain boundary sliding was investigated at select boundaries, and it was determined that GBS magnitude profiles can have large gradients along a single boundary and vary significantly between boundaries. Using a geometric compatibility factor (m′) to quantify favorability of slip transmission, the two grain boundaries that exhibited the largest average GBS magnitude experienced contiguous slip on moderately well aligned slip systems, although the exact nature of this slip activity, whether transmission or nucleation, remains under investigation.

     

Analysis of current voltage characteristics of MWIR homojunction photodiodes for uncooled operation

Dark currents n⁺/ν/p⁺ Hg_0.69Cd_0.31Te mid wave infrared photodiodes were measured at room temperature. The diodes exhibited negative differential resistance at room-temperature, but with increasing leakage currents as a function of reverse bias. The current–voltage characteristics were simulated and fitted by incorporating trap assisted tunneling via traps and Shockley–Read–Hall generation recombination process due to dislocations in the carrier transport equations. The thermal suppression of carriers was simulated by taking energy level of trap (E_t), trap density (N_t) and the doping concentrations of n⁺ and ν regions as fitting parameters. Values of E_t and N_t were 0.78E_g and ～6–9 × 10¹⁴ cm^?3 respectively for most of the diodes. Variable temperature current voltage measurements on variable area diode array (VADA) structures confirmed the fact that variation in zero bias resistance area product (R₀A) is related to g–r processes originating from variation in concentration and kind of defects that intersect a junction area.