Purification and Characterization of a Zinc-Dependent Cinnamyl Alcohol Dehydrogenase from Leucaena leucocephala,a Tree Legume

A cinnamyl alcohol dehydrogenase (CAD) from the secondary xylem of Leucaena leucocephala has been purified to homogeneity through successive steps of ammonium sulfate fractionation, DEAE cellulose, Sephadex G-75, and Blue Sepharose CL-6B affinity column chromatographies. CAD was purified to 514.2 folds with overall recovery of 13 % and specific activity of 812. 5 nkat/mg. Native and subunit molecular masses of the purified enzyme were found to be ～76 and ～38 kDa, respectively, suggesting it to be a homodimer. The enzyme exhibited highest catalytic efficiency (Kcat/Km 3.75 μM^?1 s^?1) with cinnamyl aldehyde among all the substrates investigated. The pH and temperature optima of the purified CAD were pH 8.8 and 40 °C, respectively. The enzyme activity was enhanced in the presence of 2.0 mM Mg²⁺, while Zn²⁺ at the same concentration exerted an inhibitory effect. The inclusion of 2.0 mM EDTA in the assay system activated the enzyme. The enzyme was inhibited with caffeic acid and ferulic acid in a concentration-dependent manner, while no inhibition was observed with salicylic acid. Peptide mass analysis of the purified CAD by MALDI-TOF showed a significant homology to alcohol dehydrogenases of MDR superfamily.     

Inclusion of Ring A of Cholesterol Inside the β-Cyclodextrin Cavity: Evidence from Oxidation Reactions and Structural Studies

The disposition of cholesterol inside the -cyclodextrin cavity(-CD) was deduced from oxidation of cholesterol secondary alcoholgroups by Ca(OCl)₂ and H₂O₂ in thepyridine–acetic acid system. The amount of cholest-4-ene-3-one formedwas found to be proportional to the concentration of -cyclodextrin,resulting in 56.1% of ketone. The oxidation rate was enhanced by-cyclodextrin and its methyl, polymer and 1 : 1copper(II)–-cyclodextrin derivatives. Detailed investigationsinvolving UV-visible, ¹³C- and ¹H-NMR(T₁, 1D NOE and ROESY) spectroscopic studies were carried out.A binding constant value of 15,385 ± 1500 M^-2 wasobtained for the 2 : 1heptakis-2,6-di-O-methyl--cyclodextrin(DM-CD) : cholesterolcomplex in chloroform from UV studies. Proton and solid state¹³C-CP MAS spectra of the -CD–cholesterol mixtureshowed large magnitude shifts for the protons from the wider end of the-CD cavity as well as those of ring A and ring B of cholesterol. Both1D NOE and ROESY measurements indicated the proximity between ring A andring B protons of cholesterol and the wider end protons of -CD andDM-CD. Besides, analysis of _c,_i and tau;_m from T₁measurements showed not only a lowering of rotational motions but a value of 0.016–0.048 for some of the cholesterol protons, typical of aweak complex. Based on these studies, a probable structure for the 2 : 1complex involving two molecules of -CD/DM-CD was proposed withportions of ring A and ring B being present inside the wider end of the-CD/DM-CD cavity and ring D and the side chain attached atposition 17, projecting into the wider end of the secondCD/DM-CD molecule.     

Moisture sorption, transport, and hydrolytic degradation in polylactide

Management of moisture penetration and hydrolytic degradation of polylactide (PLA) is extremely important during the manufacturing, shipping, storage, and end-use of PLA products. Moisture transport, crystallization, and degradation, in PLA have been measured through a variety of experimental techniques including size-exclusion chromatography, differential scanning calorimetry, and X-ray diffraction. Quartz crystal microbalance and dynamic vapor sorption experiments have also been used to measure moisture sorption isotherms in PLA films with varying crystallinity. A surprising result is that, within the accuracy of the experiments, crystalline and amorphous PLA films exhibit identical sorption isotherms.     

Study of Thin Polymeric Film Deposited by the PECVD Process for use at 193 nm

A plasma enhanced chemical vapor deposition (PECVD) reactor was used to deposit thin polymeric films with high absorption at 193 nm. The reactor is suitable to deposit uniform and pinhole free thin polymeric films with conformality over 95%. Conformal films with thickness as low as 200 Å have been deposited on silicon, glass, and quartz substrates, as well as silicon oxide, silicon nitrate, and aluminum films. Deposited films had variations in thickness of 3 to 5% over an area of 8 inches in diameter. Thin films deposited on silicon substrates under varying levels of RF power were scanned using the AFM technique. The measurements show increasing surface roughness of the scanned samples as the RF power increases.     

A 2‐Tyr‐1‐carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase

N,N‐dimethyl formamide (DMF) is an extensively used organic solvent but is also a potent pollutant. Certain bacterial species from genera such as Paracoccus, Pseudomonas, and Alcaligenes have evolved to use DMF as a sole carbon and nitrogen source for growth via degradation by a dimethylformamidase (DMFase). We show that DMFase from Paracoccus sp. strain DMF is a halophilic and thermostable enzyme comprising a multimeric complex of the α₂β₂ or (α₂β₂)₂ type. One of the three domains of the large subunit and the small subunit are hitherto undescribed protein folds of unknown evolutionary origin. The active site consists of a mononuclear iron coordinated by two Tyr side‐chain phenolates and one carboxylate from Glu. The Fe³⁺ ion in the active site catalyzes the hydrolytic cleavage of the amide bond in DMF. Kinetic characterization reveals that the enzyme shows cooperativity between subunits, and mutagenesis and structural data provide clues to the catalytic mechanism.     

Nonequilibrium noise and instabilities in membranes with active pumps

We study the statistical properties and dynamics of flexible fluid membranes containing active transmembrane proteins and find that such active membranes can be either stable or unstable to small disturbances, depending on the signs of certain crucial parameters characterising the protein-membrane interaction. A major finding is that the shape-fluctuation spectrum in the stable case for a zero-tension active membrane has the same form over a large range of length scales as at equilibrium, but with a nonequilibrium “noise temperature” determined by the activity.     

Noncovalent Synthesis of Hierarchical Zinc Phosphates from a Single Zn4O12P4 Double‐Four‐Ring Building Block: Dimensionality Control through the Choice of Auxiliary Ligands

In contrast to the well‐known reaction of phosphonic acids RP(O)(OH)₂ with divalent transition‐metal ions that yields layered metal phosphonates [RPO₃M(H₂O)]_n, the 2,6‐diisopropylphenyl ester of phosphoric acid, dippH₂, reacts with zinc acetate in methanol under ambient conditions to afford tetrameric zinc phosphate [(ArO)PO₃Zn(MeOH)]₄ ( 1 ). The coordinated methanol in 1 can be readily exchanged by stronger Lewis basic ligands at room temperature. This strategy opens up a new avenue for building double‐four‐ring (D4R) cubane‐based supramolecular assemblies through strong intercubane hydrogen‐bonding interactions. Seventeen pyridinic ligands have been used to synthesize as many D4R cubanes [(ArO)PO₃Zn(L)]₄ ( 2 – 18 ) from 1 . The ligands have been chosen in such a way that the majority of them contain an additional functional group that could be used for noncovalent synthesis of extended structures. When the ligand does not contain any other hydrogen‐bonding donor–acceptor sites (e.g., 2,4,6‐trimethylpyridine (collidine)), zero‐dimensional D4R cubanes have been obtained. The use of pyridine, lutidine, 2‐aminopyridine, and 2,6‐diaminopyridine, however, results in the formation of linear or zigzag one‐dimensional assemblies of D4R cubanes through strong intermolecular C? H???O or N? H???O interactions. Construction of two‐dimensional assemblies of zinc phosphates has been achieved by employing 2‐hydroxypyridine or 2‐methylimidazole as the exo‐cubane ligand on zinc centers. The introduction of an alcohol side chain on the pyridinic ligand in such a way that the ? CH₂OH group cannot participate in intracubane hydrogen bonding (e.g., pyridine‐3‐methanol, pyridine‐4‐methanol, and 3,5‐dimethylpyrazole‐N‐ethanol) leads to the facile noncovalent synthesis of three‐dimensional framework structures. Apart from being useful as building blocks for noncovalent synthesis of zeolite‐like materials, compounds 1 – 18 can also be thermolyzed at approximately 500 °C to yield high‐purity zinc pyrophosphate (Zn₂P₂O₇) ceramic material.     

Mixed-mode crack-tip deformations studied using a modified flexural specimen and coherent gradient sensing

An optical mapping of deformation fields and evaluation of fracture parameters near mixed-mode cracks in homogeneous specimens under elastostatic conditions is undertaken. A modified edge notched flexural geometry is used in the study and its ability in providing a relatively wide range of mode mixities is demonstrated. A full-field, optical shearing interferometry called ‘coherent gradient sensing’ (CGS) is used in the study. Crack-tip parameters such as stress-intensity factors, mode mixity and energy-release rate are measured from the interference patterns. The patterns are analyzed using Williams' mixed-mode, asymptotic expansion field. An expression for energy-release rate for the specimen is also derived using beam theory. The theoretical stress-intensity factors are then obtained using a mode-partitioning method based on moment decomposition. Experimental measurements and theoretical predictions are found to be in good agreement. Limitations of the mode-partitioning method used in the investigation are also pointed out.     

Novel layered copper phosphoramidate, which contains six-membered rings made of five different elements

Copper(II) perchlorate and (PhCONH)P(O)(OH)2 (H2bpa) react in methanol to yield [Cu(Hbpa)2]n, a novel layered solid that displays several interesting features. Unlike the previously reported copper phosphonates, a rare hexacoordination around the metal is observed in the title compound because of the amide C=O coordination to Cu in addition to the phosphoramidate P-O coordination. The six-membered chelate rings present in the title compound are made up of five different elements (Cu, P, C, N, and O).