Self-assembled heterotrimeric collagen triple helices directed through electrostatic interactions

Collagen, a fibrous protein, is an essential structural component of all connective tissues such as cartilage, bones, ligaments, and skin. Type I collagen, the most abundant form, is a heterotrimer assembled from two identical alpha1 chains and one alpha2 chain. However, most synthetic systems have addressed homotrimeric triple helices. In this paper we examine the stability of several heterotrimeric collagen-like triple helices with an emphasis on electrostatic interactions between peptides. We synthesize seven 30 amino acid peptides with net charges ranging from -10 to +10. These peptides were mixed, and their ability to form heterotrimers was assessed. We successfully show the assembly of five different AAB heterotrimers and one ABC heterotrimer. The results from this study indicate that intermolecular electrostatic interactions can be utilized to direct heterotrimer formation. Furthermore, amino acids with poor stability in collagen triple helices can be "rescued" in heterotrimers containing amino acids with known high triple helical stability. This mechanism allows collagen triple helices to have greater chemical diversity than would otherwise be allowed.     

Flotation-spectrophotometric method for the determination of mercury using iodide and brilliant green

This paper describes a sensitive spectrophotometric method for the determination of mercury, based on the flotation of a mercury iodide-brilliant green complex with cyclohexane at pH 5 and dissolution of the complex in acetone. The absorbance of the complex is measured at 625 nm. Beer's law is obeyed from 4–500 g/l of mercury. The method is highly sensitive ( = 5.96 × 10⁵ 1 mol^–1 cm^–1) and selective, as it is free from interferences by almost all cations and anions in the presence of EDTA. Furthermore, a two-level orthogonal array design as a chemometric method has been used for optimization of the various parameters involved. The method has been successfully applied to paper industry effluents.     

Simple synthesis of 2-acetyl-5,8-dimethoxy-3,4-dihydronaphthalene,a key intermediate for the synthesis of optically active anthracycliones

2-Acetyl-5,8-dimethoxy-3,4-dihydronaphthalene is synthesised easily·starting from 2-acetyl-5,8-dimethoxytetralone.     

Homotopy analysis method with a non-homogeneous term in the auxiliary linear operator

We demonstrate the efficiency of a modification of the normal homotopy analysis method (HAM) proposed by Liao [2] by including a non-homogeneous term in the auxiliary linear operator (this can be considered as a special case of “further generalization” of HAM given by Liao in [2]). We then apply the modified method to a few examples. It is observed that including a non-homogeneous term gives faster convergence in comparison to normal HAM. We also prove a convergence theorem, which shows that our technique yields the convergent solution.     

Molecular modeling studies, synthesis, and biological evaluation of Plasmodium falciparum enoyl-acyl carrier protein reductase (PfENR) inhibitors

The search for new antimalarial agents is necessary as current drugs in the market become vulnerable due to the emergence of resistance strains of Plasmodium falciparum (P. falciparum). The biosynthetic pathway for fatty acids has been recognized and validated as an important drug target in P.falciparum. One of the important enzymes in this pathway that has a determinant role in completing the cycles of chain elongation is Enoyl-ACP reductase (ENR) also popularly known as FabI. In this paper we report the design, synthesis, and microbial evaluation of inhibitors of Plasmodium enoyl reductase (PfENR). The search for inhibitors involved a virtual screening of the iResearch database with docking simulations. One of the hits was selected and modified to optimize its binding to PfENR; this resulted in the development of analogues of N-benzylidene-4-phenyl-1,3-thiazol-2-amine. The activity of these analogues was predicted from comparative molecular field analysis (CoMFA) and comparative molecular similarity indices analysis (CoMSIA) models constructed from a dataset of 43 known inhibitors of PfENR. The most promising molecules were synthesized and their structures characterized by spectroscopic techniques. The molecules were screened for in vitro antimalarial activity by whole-cell assay method. Two molecules, viz. VRC-007 and VRC-009, were found to be active at 4.67 and 7.01 μM concentrations, respectively.     

Asymmetric synthesis of (+)-stagonolide C and (−)-aspinolide A via organocatalysis

A new enantioselective synthesis of two important fungal metabolites, (+)-stagonolide C and (?)-aspinolide A, has been described from readily available raw materials. Proline catalyzed asymmetric α-aminooxylation and Jorgensen’s epoxidation of aldehydes are the key reactions employed in the introduction of chirality. The formation of the 10-membered lactone core structure was finally accomplished via Steglich esterification and ring closing metathesis reactions.     

Mixed-ligand chelate extraction of neodymium(III) with thenoyltrifluoroacetone and various sulphoxides

Mixed-ligand chelate extraction of Nd(III) into benzene with mixtures of thenoyltrifluoroacetone (HTTA) and bis-2-ethylhexyl sulphoxide (B2EHSO) or di-n-octyl sulphoxide (DOSO) or diphenyl sulphoxide (DPhSO) or trioctylphosphine oxide (TOPO) from thiocyanate solutions has been studied. A very high synergistic enhancement of the order 10(3) has been observed in these systems. Thus this mixed-ligand chelate system may be useful in the extraction and separation of Nd(III) from other metal ions. The mechanism of extraction can be explained by a simple chemically based model presented in this paper.     

Glyoxylic acid in the reaction of isatoic anhydride with amines: a rapid synthesis of 3-(un)substituted quinazolin-4(3H)-ones leading to rutaecarpine and evodiamine

A dual reactant/catalyst role of glyoxylic acid in the reaction of isatoic anhydride with various amines afforded a novel, robust and rapid synthesis of 3-(un)substituted quinazolin-4(3H)-ones. This metal catalyst-free reaction proceeds via an unusual and unexpected cleavage of C–C bond. A shorter and common route to two alkaloids, that is, rutaecarpine and evodiamine is also accomplished.     

Ground state C2 density measurement in carbon plume using laser-induced fluorescence spectroscopy

The temporal evolution and spatial distribution of C₂ molecules produced by laser ablation of a graphite target is studied using optical emission spectroscopy, dynamic imaging and laser-induced fluorescence (LIF) investigations. We observe peculiar bifurcation of carbon plume into two parts; stationary component close to the target surface and a component moving away from the target surface which splits further in two parts as the plume expands. The two distinct plumes are attributed to recombination of carbon species and formation of nanoparticles. The molecular carbon C₂ moves with a faster velocity and dies out at ~ 800 ns whereas the clusters of nanoparticle move with a slower velocity due to their higher mass and can be observed even after 1600 ns. C₂ molecules in the d³Π_g state were probed for laser-induced fluorescence during ablation of graphite using the Swan (0,0) band at 516.5 nm. The fluorescence spectrum and images of fluorescence d³Π_g − a³Π_u(0,1)(λ = 563.5 nm) are recorded using a spectrograph attached to the ICCD camera. To get absolute ground state C₂ density from fluorescence images, the images are calibrated using complimentary absorption experiment. This study qualitatively helps to get optimum conditions for nanoparticle formation using the laser ablation of graphite target and hence deducing optimum conditions for thin film deposition.