The effect of point mutations on copper(II) complexes with peptide fragments encompassing the 106–114 region of human prion protein

Abstract  

The tetrapeptides Ac-SKHM-NH₂, Ac-TKHM-NH₂, Ac-MKHS-NH₂, Ac-S(OMe)KHM-NH₂, and Ac-MKHS(OMe)-NH₂ and the nonapeptides Ac-KTNSKHMAG-NH₂ and Ac-KTNMKHSAG-NH₂ were synthesized and their copper(II) complexes were studied by potentiometric, UV–Vis, circular dichroism (CD), and electron paramagnetic resonance (EPR) spectroscopic methods. These peptides mimic the 109–112 and 106–114 residues of the sequence of human prion protein. The imidazole-N donor atoms of histidyl residues were found to be the primary metal binding sites of all peptide fragments. This binding mode provides a good possibility for the cooperative deprotonation and metal ion coordination of two amide functions preceding histidine. The (N_im,N⁻,N⁻)-bonded species predominate in the pH range 5.5–7.0 and the free coordination sites of these species make possible the metal binding of weakly coordinating side chains. The comparison of the potentiometric and spectroscopic results revealed the stabilizing role of the oxygen donors of seryl, threonyl, or methoxyseryl residues of Ac-SKHM-NH₂, Ac-TKHM-NH₂, Ac-S(OMe)KHM-NH₂, and Ac-KTNSKHMAG-NH₂ containing the mutations in position 109. These interactions were, however, not observed in the peptides containing the specific amino acids in other locations of the peptide sequence.     

Reactions of benzotriazoles with diethyl ethoxymethylenemalonate; ethylation and michael addition. Comparison with other esters and N-heterocycles

Benzotriazole and its 5-methyl-and 5-nitro derivatives react with diethyl ethoxymethylenemalonate by ethylation at each of the ring N-atoms and through Michael addition, to give the isomeric esters ethyl (E/Z) 3-[5(6)-R-benzotriazol-1-yl]propenoates. Benzotriazole and its 5-nitro derivative react similarly with ethyl acetoacetate but N-ethyl derivatives are obtained in lower yields. Other 1,2,3-triazoles derivatives and indole were ineffective in this reaction while benzimidazole produced similar results but accompanied with a small amount of a benzimidazoline addition product, whose structure has been determined by crystallo-graphic analysis.     

Electron-attachment resonances of glycine zwitterions from quantum scattering calculations: modeling macrosolvation effects

A computational study of the quantum dynamics for low-energy electrons scattered by the isolated zwitterionic species of the glycine molecule is carried out using a model interaction potential described in the main text. The macroscopic effects of water solvation on the target molecule in the electron scattering problem are described through a continuum polarizable model (CPCM) which modifies the target molecular structure. In such a way, realistic molecular orbitals depicting the glycine zwitterion in solution are used to model the electron-molecule interaction. The results of the calculations indicate the presence of five different transient negative ions (TNIs) formed at energies from the threshold and up to about 6 eV. Although no nuclear motion was explicitly considered in the ensuing decay processes, the analysis of the nodal structures and density distributions for the resonant excess electron wavefunctions over the molecular space suggests possible anionic fragmentations that produce (Gly-H)-, H-, -CO2-, and -NH3. The likely consequences of such releases into the medium are briefly discussed.     

Ultra‐fast adenosine 5′‐triphosphate,adenosine 5′‐diphosphate and adenosine 5′‐monophosphate detection by pressure‐assisted capillary electrophoresis UV detection

Herein, we report a new CE method to measure adenine nucleotides adenosine 5′‐triphosphate, adenosine 5′‐diphosphate, and adenosine 5′‐monophosphate in red blood cells. For this purpose, 20 mmol/L sodium acetate buffer at pH 3.80 was used as running electrolyte, and the separation was performed by the simultaneous application of a CE voltage of 25 kV and an overimposed pressure of 0.2 psi from inlet to outlet. A rapid separation of these analytes in less than 1.5 min was obtained with a good reproducibility for intra‐ and inter‐assay (CV<4 and 8%, respectively) and an excellent analytical recovery (from 98.3 to 99%). The applicability of our method was proved by measuring adenine nucleotides in red blood cells.     

Effect of Ceria Addition to Na2O-ZrO2 Catalytic Mixtures on Lignin Waste Ex-Situ Pyrolysis

Waste lignin is a potential source of renewable fuels and other chemical precursors under catalytic pyrolysis. For this purpose, four mixed metal oxide catalytic mixtures (Cat) derived from Na₂CO₃, CeO₂ and ZrO₂ were synthesised in varying compositions and utilised in a fixed bed reactor for catalytic vapour upgrading of Etek lignin pyrolysis products at 600 °C. The catalytic mixtures were analysed and characterised using XRD analysis, whilst pyrolysis products were analysed for distribution of products using FTIR, GC-MS and EA. Substantial phenolic content (20 wt%) was obtained when using equimolar catalytic mixture A (Cat_A), however the majority of these phenols were guaiacol derivatives, suggesting the catalytic mixture employed did not favour deep demethoxylation. Despite this, addition of 40–50% ceria to NaZrO₂ resulted in a remarkable reduction of coke to 4 wt%, compared to ~9 wt% of NaZrO₂. CeO₂ content higher than 50% favoured the increase in conversion of the holo-cellulose fraction, enriching the bio-oil in aldehydes, ketones and cyclopentanones. Of the catalytic mixtures studied, equimolar metal oxides content (Cat_A) appears to showcase the optimal characteristics for phenolics production and coking reduction.     

On the Proton-Bound Noble Gas Dimers (Ng-H-Ng)+ and (Ng-H-Ng’)+ (Ng,Ng’ = He-Xe): Relationships between Structure,Stability, and Bonding Character

The structure, stability, and bonding character of fifteen (Ng-H-Ng)⁺ and (Ng-H-Ng’)⁺ (Ng, Ng’ = He-Xe) compounds were explored by theoretical calculations performed at the coupled cluster level of theory. The nature of the stabilizing interactions was, in particular, assayed using a method recently proposed by the authors to classify the chemical bonds involving the noble-gas atoms. The bond distances and dissociation energies of the investigated ions fall in rather large intervals, and follow regular periodic trends, clearly referable to the difference between the proton affinity (PA) of the various Ng and Ng’. These variations are nicely correlated with the bonding situation of the (Ng-H-Ng)⁺ and (Ng-H-Ng’)⁺. The Ng-H and Ng’-H contacts range, in fact, between strong covalent bonds to weak, non-covalent interactions, and their regular variability clearly illustrates the peculiar capability of the noble gases to undergo interactions covering the entire spectrum of the chemical bond.     

Semi‐interpenetrating polymer networks of methyl cellulose and polyacrylamide prepared by frontal polymerization

In this study, the feasibility of frontal polymerization (FP) as an alternative and convenient technique for the preparation of semi‐interpenetrating polymer networks made of methyl cellulose (MC) and cross‐linked polyacrylamide (PAAm) is demonstrated. FP was performed in water and glycerol, as largely available, nontoxic solvents. Although FP occurred in both media, differences were found by comparing the samples made in the two solvents. In particular, those prepared in water are characterized by larger inhomogeneity and less reproducibility, thus accounting for the boiling effects that influence propagating polymerization fronts when water was used. The effects of the ratio among MC and PAAm, the amount of cross‐linker and solvent medium were studied in terms of influence on temperature and velocity of FP fronts, glass transition temperature (dried samples), swelling behavior, dynamic‐mechanical properties (gels swollen in both water or glycerol), and tensile behavior. © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2016 , 55, 1268–1274     

Atomic XAFS as a tool to probe the reactivity of metal oxide catalysts: quantifying metal oxide support effects

The potential of atomic XAFS (AXAFS) to directly probe the catalytic performances of a set of supported metal oxide catalysts has been explored for the first time. For this purpose, a series of 1 wt % supported vanadium oxide catalysts have been prepared differing in their oxidic support material (SiO2, Al2O3, Nb2O5, and ZrO2). Previous characterization results have shown that these catalysts contain the same molecular structure on all supports, i.e., a monomeric VO4 species. It was found that the catalytic activity for the selective oxidation of methanol to formaldehyde and the oxidative dehydrogenation of propane to propene increases in the order SiO2 < Al2O3 < Nb2O5 < ZrO2. The opposite trend was observed for the dehydrogenation of propane to propene in the absence of oxygen. Interestingly, the intensity of the Fourier transform AXAFS peak decreases in the same order. This can be interpreted by an increase in the binding energy of the vanadium valence orbitals when the ionicity of the support (increasing electron charge on the support oxygen atoms) increases. Moreover, detailed EXAFS analysis shows a systematic decrease of the V-Ob(-M(support)) and an increase of a the V-O(H) bond length, when going from SiO2 to ZrO2. This implies a more reactive OH group for ZrO2, in line with the catalytic data. These results show that the electronic structure and consequently the catalytic behavior of the VO4 cluster depend on the ionicity of the support oxide. These results demonstrate that AXAFS spectroscopy can be used to understand and predict the catalytic performances of supported metal oxide catalysts. Furthermore, it enables the user to gather quantitative insight in metal oxide support interactions.     

Copper(II) interaction with prion peptide fragments encompassing histidine residues within and outside the octarepeat domain: speciation, stability constants and binding details

A 31-mer polypeptide, which encompasses residues 84-114 of human prion protein HuPrP(84-114) and contains three histidyl residues, namely one from the octarepeat (His85) and two histidyl residues from outside the octarepeat region (His96 and His111), and its mutants with two histidyl residues HuPrP(84-114)His85Ala, HuPrP(84-114) His96Ala, HuPrP(84-114)His111Ala and HuPrP(91-115) have been synthesised and their Cu2+ complexes studied by potentiometric and spectroscopic (UV/Vis, CD, EPR, ESI-MS) techniques. The results revealed a high Cu2+-binding affinity of all peptides, and the spectroscopic studies made it possible to clarify the coordination mode of the peptides in the different complex species. The imidazole nitrogen donor atoms of histidyl residues are the exclusive metal-binding sites below pH 5.5, and they have a preference for macrochelate structure formation. The deprotonation and metal-ion coordination of amide functions take place by increasing the pH; all of the histidines can be considered to be independent metal-binding sites in these species. As a consequence, di- and trinuclear complexes can be present even in equimolar samples of the metal ion and peptides, but the ratios of polynuclear species do not exceed the statistically expected ones; this excludes the possibility of cooperative Cu2+ binding. The species with a (N(im),N,N)-binding mode are favoured around pH 7, and their stability is enhanced by the macrochelation from another histidyl residue in the mononuclear complexes. The independence of the histidyl sites results in the existence of coordination isomers and the preference for metal binding follows the order of: His111>His96>His85. Deprotonation and metal-ion coordination of the third amide functions were detected in slightly alkaline solutions at each of the metal-binding sites; all had a (N(im),N,N,N)-coordination mode. Spectroscopic measurements also made it clear that the four lysyl amino groups of the peptides are not metal-binding sites in any cases.