Parametric inference for discrete observations of diffusion processes with mixed effects

Stochastic differential equations with mixed effects provide means to model intra-individual and inter-individual variability in repeated experiments leading to longitudinal data. We consider N i.i.d. stochastic processes defined by a stochastic differential equation with linear mixed effects which are discretely observed. We study a parametric framework with distributions leading to explicit approximate likelihood functions and investigate the asymptotic behavior of estimators under the asymptotic framework : the number N of individuals (trajectories) and the number n of observations per individual tend to infinity within a fixed time interval. The estimation method is assessed on simulated data for various models.     

PASE synthesis of 1-azolyl-1H-1,2,4-triazoles by the reaction of diazoazoles with ethyl isocyanoacetate

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Introducing tox-Profiles of Chemical Reactions

In this Essay, we present a critical analysis of two common practices in modern chemistry—that is, of using speculations about the “greenness” and “nontoxicity” of developed synthesis procedures and of a priori labelling various compounds derived from natural sources as being environmentally safe. We note that every organic molecule that contains functional groups should be biologically active. Thus, analysis of the particular greenness and the potential environmental impact of a given chemical process should account for the biological activity of all its components in a measureable (rather than empirical) way. We highlight the necessity of clarifying discussions on biological activity and toxicity and propose possible ways of introducing tox-Profiles as a reliable overview of the overall toxicity of chemical reactions.     

Ion Mobility Spectrometry-Mass Spectrometry Coupled with Gas-Phase Hydrogen/Deuterium Exchange for Metabolomics Analyses

Ion mobility spectrometry-mass spectrometry (IMS-MS) in combination with gas-phase hydrogen/deuterium exchange (HDX) and collision-induced dissociation (CID) is evaluated as an analytical method for small-molecule standard and mixture characterization. Experiments show that compound ions exhibit unique HDX reactivities that can be used to distinguish different species. Additionally, it is shown that gas-phase HDX kinetics can be exploited to provide even further distinguishing capabilities by using different partial pressures of reagent gas. The relative HDX reactivity of a wide variety of molecules is discussed in light of the various molecular structures. Additionally, hydrogen accessibility scoring (HAS) and HDX kinetics modeling of candidate (in silico) ion structures is utilized to estimate the relative ion conformer populations giving rise to specific HDX behavior. These data interpretation methods are discussed with a focus on developing predictive tools for HDX behavior. Finally, an example is provided in which ion mobility information is supplemented with HDX reactivity data to aid identification efforts of compounds in a metabolite extract.

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The Ugi reaction with CF3-carbonyl compounds: effective synthesis of α-trifluoromethyl amino acid derivatives

The Ugi reaction with CF₃-carbonyl compounds is described in detail. The method is efficient for the multicomponent preparation of α-trifluoromethyl (Tfm) amino acids, α-Tfm containing dipeptides, and iminodicarboxylic acids. In addition, the first protected CF₃-opine derivative was prepared. The scope, limitations, and stereochemistry of the approach are discussed.     

Two modifications formed by "sulflower" C16S8 molecules, their study by XRD and optical spectroscopy (Raman, IR, UV-Vis) methods

Sublimation of sulflower, octathio[8]circulene C 16S 8 ( 1), on heating under high vacuum ( approximately 10 (-5) Torr) leads to successive formation of two modifications: a white film ( 1W) and a red polycrystalline solid ( 1R). When kept at room temperature for several weeks, 1W spontaneously turns pink, reflecting the monotropic phase transition 1W --> 1R. The accurate molecular and crystal structure of 1R has been studied using low-temperature (100 K) high-resolution single crystal X-ray analysis. The C 16S 8 molecule in crystal is strictly planar with nearly equalized bonds of each type (C-C, C-S, and CC). The point symmetry group of the free molecule is D 8 h , and the crystal space group is P2 1/ n. These data allowed group-theoretical analysis of vibrational normal modes to be accomplished. Investigation of the charge density distribution of 1R including Bader's AIM approach has revealed rather strong intermolecular S...S, S...C, and C...C interactions of charge transfer and pi-stacking types with overall lattice energy of 28.5 kcal/mol. The charge transfer due to the S...S interactions is the reason for the red coloration of 1R. The latter is reflected by its UV-vis spectrum exhibiting absorption bands in the visible region which are absent from that of 1W. Both modifications were studied comparatively by vibrational (Raman, IR) and electronic spectroscopies as well as XRD powder diffraction. All the results obtained are fully consistent and show that 1W is much less ordered than 1R with significantly weakened intermolecular interactions. Rationalizing of these results has led to an idea that 1W could be soluble, in contrast to 1R. Indeed, 1W appeared soluble in common solvents; this finding opens the way to the study of the chemistry of 1 and investigation of its electrooptical properties.     

Dependence of the quality of adhesion between poly(dimethylsiloxane) and glass surfaces on the conditions of treatment with oxygen plasma

Treatment with oxygen-containing plasma is an essential step for the fabrication of devices containing components of polydimethylsiloxane (PDMS). Such oxidative treatment chemically modifies the surface of PDMS allowing it to permanently adhere to glass, quartz, PDMS and other silica-based substrates. Overexposure of PDMS to oxidative gas plasma, however, compromises its adhesiveness. Therefore, regulation of the duration and the conditions of the plasma treatment is crucial for achieving sufficient surface activation without overoxidation. Using a semiquantitative ternary approach, we evaluated the quality of adhesion ( QA) between flat PDMS and glass substrates pretreated with oxygen plasma under a range of different conditions. The quality of adhesion manifested good correlation trends with the surface properties of the pretreated PDMS. Examination of the QA dependence on the treatment duration and on the pressure and the RF power of the plasma revealed a range of oxidative conditions that allowed for permanent adhesion with quantitative yields.     

Which Metals are Green for Catalysis? Comparison of the Toxicities of Ni,Cu, Fe,Pd, Pt,Rh, and Au Salts

Environmental profiles for the selected metals were compiled on the basis of available data on their biological activities. Analysis of the profiles suggests that the concept of toxic heavy metals and safe nontoxic alternatives based on lighter metals should be re‐evaluated. Comparison of the toxicological data indicates that palladium, platinum, and gold compounds, often considered heavy and toxic, may in fact be not so dangerous, whereas complexes of nickel and copper, typically assumed to be green and sustainable alternatives, may possess significant toxicities, which is also greatly affected by the solubility in water and biological fluids. It appears that the development of new catalysts and novel applications should not rely on the existing assumptions concerning toxicity/nontoxicity. Overall, the available experimental data seem insufficient for accurate evaluation of biological activity of these metals and its modulation by the ligands. Without dedicated experimental measurements for particular metal/ligand frameworks, toxicity should not be used as a “selling point” when describing new catalysts.