A combined 3D-QSAR and molecular docking strategy to understand the binding mechanism of V600EB-RAF inhibitors

B-RAF is a member of the RAF protein kinase family involved in the regulation of cell growth, differentiation, and proliferation. It forms a part of conserved apoptosis signals through the RAS?CRAF?CMAPK pathway. ^V600EB-RAF protein has much potential for scientific research as therapeutic target due to its involvement in human melanoma cancer. In this work, a molecular modeling study was carried out for the first time with 3D-QSAR studies by following the docking protocol on three different data sets of ^V600EB-RAF inhibitors. Based on the co-crystallized compound (PDB ID: 1UWJ), a receptor-guided alignment method was utilized to derive reliable CoMFA and CoMSIA models. The selected CoMFA model gives the best statistical values (q ² =?0.753, r ² =?0.962). With the same alignment protocol, a statistically reliable CoMSIA model out of fourteen different combinations was also derived (q ² = 0.807, r ² = 0.961). The actual predictive powers of both models were rigorously validated with an external test set, which gave satisfactory predictive r ² values for CoMFA and CoMSIA models, 0.89 and 0.88, respectively. In addition, y-randomization test was also performed to validate our 3D-QSAR models. Contour maps from CoMFA and CoMSIA models supported statistical results, revealed important structural features responsible for biological activity within the active site and explained the correlation between biological activity and receptor?Cligand interactions. Based on the developed models few new structures were designed. The newly predicted structure (IIIa) showed higher inhibitory potency (pIC₅₀ 6.826) than that of the most active compound of the series.     

Kinetic Instability of Anisotropic Drift Wave Accompanied by Field Aligned Currents in Solar Coronal Loop

Solar coronal loops are frequently accompanied by the field-aligned currents, which drive instabilities if the drift velocity u₀> v_A the Alfvén velocity. For our choice of parameters, the critical threshold value of u₀/v_A is~3.0 for growth and the corresponding current filling factor~10^-3-10^-4. Below this value we are no longer in the kinetic regime. The coronal loops also have short-scale density gradients within each loop. The electron resonance in the presence of density gradient causes the drift mode to grow. We study the effect of these two free energy sources, the electron drift and the density gradient, in the presence of temperature anisotropy T_⊥α > T_||α. These effects simultaneously exist in the coronae. Using gyrokinetic theory, we investigate the influence of these effects, examine how they interplay with each other and study the consequent growth of the magnetosonic wave. We observe that kinetic instability driven by density gradient can be suppressed by field-aligned currents. The temperature anisotropy with chosen signatures causes further stabilizing effect. The results may prove useful to study the heating mechanism of solar coronal loops, acceleration of particles and confinement of particles in the thermonuclear reactors.     

Synthesis of Tapioca Cellulose-based Poly(amidoxime) Ligand for Removal of Heavy Metal Ions

Poly(acrylonitrile)/cellulose block copolymer (PAN-b-cell) was prepared by using a free radical initiating process and then the nitrile functional groups of the PAN blocks of the copolymers were transformed into amidoxime ligands. The resulting poly(amidoxime) ligands could complex with heavy metal ions; for example, the reflectance spectra of the [Cu -ligand]ⁿ⁺ was found to be at the highest absorbance, about 94%, at pH 6. The pH was the key parameter for metal ions sensing by the ligand. The adsorption capacity for copper was very good, 272 mg g^?1, with a fast adsorption rate (t_1/2 = 10 min). The adsorption capacities for other heavy metal ions such as Fe³⁺, Cr³⁺, Co³⁺ and Ni²⁺ were also good, being 242, 219, 201 and 195 mg g^?1, respectively, at pH 6. The heavy metal ions removal efficiency from water was 98% at low concentration. The data proved that the heavy metal ions adsorption onto the polymer ligands were well fitted with the Langmuir isotherm model (R²>0.99), which suggests that the cellulose-based adsorbent surface namely the poly(amidoxime) ligand, was homogenous and a monolayer. The reusability was examined by a sorption/desorption process for six cycles and the extraction efficiency was determined. This new adsorbent could be reused for 6 cycles without any significant loss in its original removal function.     

Synthesis,in vitro $$\alpha $$-glucosidase inhibitory activity,and in silico study of ( E)-thiosemicarbazones and ( E)-2-(2-(arylmethylene)hydrazinyl)-4-arylthiazole derivatives

This study is focused on the identification of thiazole-based inhibitors for the \(\alpha \)-glucosidase enzyme. For that purpose, (E)-2-(2-(arylmethylene)hydrazinyl)-4-arylthiazole derivatives were synthesized in two steps and characterized by various spectroscopic techniques. All derivatives and intermediates were evaluated for their in vitro \(\alpha \)-glucosidase inhibitory activity. Thiosemicarbazones 20 and 35, and cyclized thiazole derivatives 2, 5–11, 13, 15, 21–24, 27–31, and 36–37 showed significant inhibitory potential in the range of \(\hbox {IC}_{50}=6.2\pm 0.19\)–\(43.6\pm 0.23~\upmu \hbox {M}\) as compared to standard acarbose (\(\hbox {IC}_{50}=37.7\pm 0.19~\upmu \hbox {M}\)). A molecular modeling study was carried out to understand the binding interactions of compounds with the active site of enzyme.     

A Mechanistic Overview of the Current Status and Future Challenges of Aluminum Anode and Electrolyte in Aluminum-Air Batteries

Aluminum-air batteries (AABs) are regarded as attractive candidates for usage as an electric vehicle power source due to their high theoretical energy density (8100 Wh kg⁻¹), which is considerably higher than that of lithium-ion batteries. However, AABs have several issues with commercial applications. In this review, we outline the difficulties and most recent developments in AABs technology, including electrolytes and aluminum anodes, as well as their mechanistic understanding. First, the impact of the Al anode and alloying on battery performance is discussed. Then we focus on the impact of electrolytes on battery performances. The possibility of enhancing electrochemical performances by adding inhibitors to electrolytes is also investigated. Additionally, the use of aqueous and non-aqueous electrolytes in AABs is also discussed. Finally, the challenges and potential future research areas for the advancement of AABs are suggested.     

Magnetic susceptibility under pressure and anisotropy of electrical conductivity in quasi-one-dimensional (perylene)2(AsF6)0.75(PF6)0.35 × 0.85CH2Cl2

The magnetic susceptibility and electrical conductivity of the quasi-one-dimensional organic metal (Perylene)₂(AsF₆)_0.75(PF₆)_0.35 × 0.85CH₂Cl₂ was studied in the temperature range 3–300 K. The measured susceptibility can be separated into its defect χ_d, core χ_c and enhanced paramagnetic spin susceptibility χ_p components. χ_p is found to decrease upon lowering the temperature or applying pressure, in analogy with results on charge transfer compounds such as TTF-TCNQ. The conductivity ratio $\text{σ}{}_6\text{σ}{}_{\mathrm{\perp }}$ also decreases with falling temperature. The present results are discussed within the context of a model which takes into account band-narrowing (electron localization) due to strong electron-phonon coupling.     

Synthesis, gas-phase photoelectron spectroscopic, and theoretical studies of stannylated dinuclear iron dithiolates

Stannylated dinuclear iron dithiolates (mu-SSnMe(2)CH(2)S)[Fe(CO)(3)](2), (mu-SCH(2)SnMe(2)CH(2)S) [Fe(CO)(3)](2), and (mu-SCH(2)SnMe(3))(2)[Fe(CO)(3)](2), which are structurally similar to the active site of iron-only hydrogenase, were synthesized and studied by gas-phase photoelectron spectroscopy. The orbital origins of ionizations were assigned by comparison of He I and He II photoelectron spectra and with the aid of hybrid density functional electronic structure calculations. Stannylation lowers the ionization energy of sulfur lone pair orbitals in these systems owing to a geometry-dependent interaction. The Fe-Fe sigma bond, which is the HOMO in all these systems, is also substantially destabilized by stannylation due to a previously unrecognized geometry-dependent interaction between axial sulfur lone pair orbitals and the Fe-Fe sigma bond. Since cleaving the Fe-Fe sigma bond is a key step in the mechanism of action of iron-only hydrogenase, these newly recognized geometry-dependent interactions may be utilized in designing biologically inspired hydrogenase catalysts.     

Thermal Treatment of Sol-Gel Derived Nickel Oxide Xerogels

Very fine nickel hydroxide and oxide xerogel powders were prepared using a new sol-gel synthesis procedure in which nickel ethoxide was produced through the reaction of nickel chloride, as a precursor, with sodium ethoxide in dehydrated ethanol, followed by the hydrolysis of nickel ethoxide with ammonia and drying the resulting hydrogel under subcritical pressures to form the xerogel. The effects of thermal treatment on the surface area, pore volume, crystallinity and particle structure of the resulting xerogels were investigated and found to have significant effects on all of these properties. Overall, the xerogel remained amorphous as Ni(OH)₂ space up to 200°C, with little change in the surface area and pore volume. At 250°C, the Ni(OH)₂ began to decompose and form crystalline NiO with the uniformity of the crystals increasing with an increase in temperature. The surface area and pore volume decreased sharply when increasingthe temperature beyond 250°C; this was the temperature where maximums of about 270 m²/g and 0.33 cm³/g were exhibited by this composite amorphous Ni(OH)₂ and crystalline NiO xerogel powders. At the higher calcination temperatures, very uniform NiO crystals with average crystallite sizes of 1.7 nm and 14.5 nm were obtained at 400 and 600°C, respectively.     

Complexes of hydrazide Schiff bases

Summary 1,2-Diphenyl-2-(benzoylhydrazino)ethanol (DBE) and 1,2-diphenyl-2-(p-nitrobenzoylhydrazino)ethanol (DPNBE) form complexes of general formulae [M(H₂L)₂]X₂ and [M₂L₂] (where M = Co or Ni, H₂L and L are the neutral and dibasic forms of the ligands and X = Cl or NO₃). The analytical, spectral, magnetic and physical studies show the complexes to be of two types, namely monomeric cationic species prepared in neutral media and neutral binuclear oxygen-bridged species formed in alkaline solution. The ligands are tridentate, coordinating through carbonyl (or enolic) oxygen, azomethine nitrogen and alcoholic oxygen atoms.