5βH,6αH,7αH,10αCH3-eudesman-6,12-olides: A novel stereochemical group of natural sesquiterpene lactones. Stereostructure of isosilerolide

A new stereochemical group of eudesmanolides - 5βH,6αH,7αH,10αCH₃-eudesman-6,12-olides - was identified mainly on the basis of proton NMR spectroscopy and checked by X-ray analysis     

Local dipole interactions induce helicity of (<Emphasis Type="Italic">S</Emphasis>)-2-butyl-<Emphasis Type="Italic">N</Emphasis>-(1,8-naphthaloyl)-2-aminobenzoate molecules containing 1,8-naphthalimide rings utilized as a column building blocks: X-ray and quantum mechanical studies

In the crystal of triclinic symmetry the title compound contains four independent molecules, which differ in the conformation of the aliphatic carbon chain (T, G ⁺and G ⁻) and in the helicity (M or P) of the N-(1,8-naphthaloyl)-2-aminobenzoate (NAB) unit. Quantum chemical MP2 calculations showed that isolated molecules favor helicity of NAB bichromophores most likely due to attractive interactions between local dipoles formed along carbonyl bonds, such that the helical arrangement of O=C–C–C–N–C=O fragments is stabilized by intramolecular interactions between terminal anti-parallel local carbonyl dipoles. In the crystal structure, columnar stacking of the anti-parallel 1,8-naphalimide rings is observed. In a column the neighboring NAB units display opposite helicity.     

Ammonium ionic liquid as modulator of the critical micelle concentration of ammonium surfactant at aqueous solution: conductimetric and dynamic light scattering (DLS) studies

We report measurements of self aggregation in aqueous solution of an ionic liquid (IL), didecyl-dimethylammonium nitrate ([DDA][NO(3)]) and a surfactant hexadecyl-trimethylammonium bromide (CTAB) and of mixtures of these two salts. The electrical conductivity and dynamic light scattering (DLS) measurements were used for the characterization of the aggregation process. The conductivity measurements were performed at three temperatures. The critical micelle concentration (CMC) was determined at different temperatures and at different ratio of two salts. The effect of IL on the micellization of CTAB has been discussed. Our results suggest that organized structures formed by CTAB and [DDA][NO(3)] self assembly in domains of several hundred nanometers size. The micellar solubility of the salicylic acid in mixed salt aqueous solutions was determined to probe the physical properties of these assemblies. We have observed, that the micellar solubility enhancement was only slightly influenced by the nature of micelles present in aqueous solution. This proves that salicylic acid solubilization is enthalpy driven.     

A study of the reactions of methionine- and histidine-containing peptides with palladium(II) complexes: The key role of steric crowding on palladium(II) in the selective cleavage of the peptide bond

¹H NMR spectroscopy was applied to study the reactions of palladium(II) complexes, cis-[Pd(dpa)Cl₂] and cis-[Pd(dpa)(H₂O)₂]²⁺ (dpa is 2,2′-dipyridylamine acting as a bidentate ligand) with the dipeptides methionylglycine (Met-Gly) and histidylglycine (His-Gly), and the N-acetylated derivatives of these dipeptides, MeCOMet-Gly and MeCOHis-Gly. All reactions were carried out in the pH range 2.0–2.5 with equimolar amounts of the palladium(II) complex and the peptide at two different temperatures, 25 and 60 °C. In the reactions of cis-[Pd(dpa)Cl₂] and cis-[Pd(dpa)(H₂O)₂]²⁺ with Met-Gly and His-Gly, no hydrolysis of the peptide bond was observed. The final product in these reactions was the [Pd(dpa)₂]²⁺ complex. The square-planar structure of this complex was confirmed by X-ray analysis. The reaction of the cis-[Pd(dpa)(H₂O)₂]²⁺ complex with the MeCOHis-Gly and MeCOMet-Gly peptides under the previously mentioned experimental conditions was remarkably selective in the cleavage of the amide bond involving the carboxylic group of methionine in the side chain. The modes of coordination of cis-[Pd(dpa)Cl₂] and cis-[Pd(dpa)(H₂O)₂]²⁺ in the reactions with the non-acetylated peptides and the total steric inhibition of the hydrolytic reaction between cis-[Pd(dpa)(H₂O)₂]²⁺ and MeCOHis-Gly can be attributed to the steric bulk of the palladium(II) complex. This finding should be taken into consideration in designing new palladium(II) complexes for the regioselective cleavage of peptides and proteins.     

Polysiloxane microspheres functionalized with imidazole groups as a palladium catalyst support

Polysiloxane microspheres containing a large number of silanol groups were obtained by an emulsion process of modified polyhydromethylsiloxane. N‐substituted imidazole groups were grafted on these microspheres by the silylation of their silanol groups with N‐[γ‐(dimethylchlorosilyl)propyl]imidazole hydrochloride. The progress of the reaction was monitored using ²⁹Si and ¹³C magic angle spinning (MAS) NMR and its impact on microsphere morphology was studied using scanning electron microscopy (SEM). The usefulness of the imidazole‐functionalized microspheres as a support for a metal catalyst was demonstrated by their reaction with PdCl₂(PhCN)₂. In this way a new heterogenized catalyst, Pd(II) complex with imidazole ligands supported on polysiloxane microspheres, was generated. This catalyst, MPd , was characterized using ¹³C and ²⁹Si MAS NMR, X‐ray photoelectron, Fourier transform infrared and far‐infrared spectroscopies, X‐ray diffraction, SEM–energy‐dispersive X‐ray spectroscopy and wide‐angle X‐ray scattering. The catalyst appears in two structures, as Pd(II) complex and Pd(0) nanoclusters. Its catalytic activity was tested using a model reaction, the hydrogenation of cinnamaldehyde, and compared with that of an analogous complex operating in a homogeneous system. MPd showed a high activity in the promotion of hydrogenation of cinnamaldehyde. The activity in the substrate conversion was stable at least in five cycles of this reaction. The main product was hydrocinnamaldehyde which could be obtained with a yield above 70%. A mechanism of the reaction is proposed. Copyright © 2016 John Wiley & Sons, Ltd.     

Determination of itraconazole and its photodegradation products with kinetic evaluation by ultra‐performance liquid chromatography/tandem mass spectrometry

A simple and reproducible UPLC‐MS/MS method for the determination of itraconazole (ITZ) and its photodegradation products formed during exposure to UV‐A radiation was developed. Chromatographic separations were carried out using an Acquity UPLC BEH C₁₈ column (2.1 × 100 mm, 1.7 μm particle size). The column was maintained at 40°C, and eluted under gradient conditions from 100% to 50% of eluent A over 13 min, at a flow rate of 0.3 mL min^?1. Eluent A was 0.1% (v/v) formic acid in water; eluent B was 0.1% (v/v) formic acid in acetonitrile. The linear regression analysis for the calibration curve showed a good linear correlation over the concentration range 0.0066–0.15 mg mL^?1 with determination coefficient > 0.99. The activities of some photocatalysts during degradation process of ITZ were compared. It was found that indirect photodegradation of ITZ was more effective than direct photolysis. Under our experimental conditions the photodegradation rate constant depended on the applied catalysts with catalytic activity decreasing in the following pattern: FeCl₃ > TiO₂/FeCl₃ > TiO₂. The kinetic analysis of the photodegradation data revealed that the degradation of the ITZ follows first‐order kinetics. The photodegradation products of ITZ were identified, and their fragmentation pathways, derived from MS/MS data, were proposed. Copyright © 2016 John Wiley & Sons, Ltd.     

GC identification of organic compounds based on partition coefficients of their TMS derivatives in a hexane-acetonitrile system and retention indices.

This paper reports the experimentally determined and calculated partition coefficients (Kp) in a heterogeneous system consisting of two partially mixing organic solvents for trimethylsilyl derivatives of 119 compounds including phenols, phenolcarboxylic acids, mono- and dicarboxylic acids, and some carbohydrates and polyols. It was demonstrated that a simple model based on the available physico-chemical properties of molecules can be used to accurately predict the hexane-acetonitrile partition coefficients. Phenols, other organic acids, and carbohydrates form complex mixtures in extracts of plant tissues, in various biological fluids, as well as in waste waters. For group identification of these mixture components, it is desirable to use the parameterj which is a combination of Kp and gas chromatographic retention indices: j = kI - log Kp. This approach increases identification reliability in gas chromatographic analysis. The use of the group parameterj in the analysis of nonvolatile organic components of waste waters is reported.     

Formation of mesophases by fluorinated enaminoketone Ni(II), Cu(II) and VO(II) complexes

Mesogenic tetradentate cis-enaminoketone Ni(II), Cu(II) and VO(II) complexes with rod-like and disc-like molecular shapes were synthesized. In these compounds some of the alkyl chains were perfluorinated. Replacing the alkyl chains by fluorinated chains stabilizes the columnar hexagonal Col_h phase whereas lamellar phases are destroyed.     

Nonenzymatic assembly of natural polyubiquitin chains of any linkage composition and isotopic labeling scheme

Polymeric chains made of a small protein ubiquitin act as molecular signals regulating a variety of cellular processes controlling essentially all aspects of eukaryotic biology. Uncovering the mechanisms that allow differently linked polyubiquitin chains to serve as distinct molecular signals requires the ability to make these chains with the native connectivity, defined length, linkage composition, and in sufficient quantities. This, however, has been a major impediment in the ubiquitin field. Here, we present a robust, efficient, and widely accessible method for controlled iterative nonenzymatic assembly of polyubiquitin chains using recombinant ubiquitin monomers as the primary building blocks. This method uses silver-mediated condensation reaction between the C-terminal thioester of one ubiquitin and the ε-amine of a specific lysine on the other ubiquitin. We augment the nonenzymatic approaches developed recently by using removable orthogonal amine-protecting groups, Alloc and Boc. The use of bacterially expressed ubiquitins allows cost-effective isotopic enrichment of any individual monomer in the chain. We demonstrate that our method yields completely natural polyubiquitin chains (free of mutations and linked through native isopeptide bonds) of essentially any desired length, linkage composition, and isotopic labeling scheme, and in milligram quantities. Specifically, we successfully made Lys11-linked di-, tri-, and tetra-ubiquitins, Lys33-linked diubiquitin, and a mixed-linkage Lys33,Lys11-linked triubiquitin. We also demonstrate the ability to obtain, by high-resolution NMR, residue-specific information on ubiquitin units at any desired position in such chains. This method opens up essentially endless possibilities for rigorous structural and functional studies of polyubiquitin signals.