ON THE ACRIDINE AND THIAZINE DYE SENSITIZED PHOTODYNAMIC INACTIVATION OF LYSOZYME—SINGLET OXYGEN SELF-QUENCHING BY THE SENSITIZERS

Abstract— The quantum yield of the photodynamic inactivation of lysozyme increases in the sequence acridine orange, methylene blue, proflavine and acriflavine (1:5:6:12). At least up to protein concentrations of 0.1 m M , singlet oxygen is exclusively responsible for the inactivation of the enzyme. For methylene blue, acriflavine and proflavine the quantum yields decrease considerably with increasing dye concentrations. From measurements in H₂O and D₂O buffer solutions it was concluded that in the case of methylene blue the effect is mainly caused by the quenching of singlet oxygen [rate constant (3–4) × 10⁸ M ⁻¹ s⁻¹]. For the acridine sensitizers both singlet oxygen and dye triplet quenching processes have to be taken into consideration. It has been found that all sensitizers act as competitive inhibitors of the enzymatic reaction of lysozyme. However, the dye-protein interaction near the active center cannot be responsible for the observed dye self-quenching effect.     

Evolutionarily conserved functional mechanics across pepsin-like and retroviral aspartic proteases

The biological function of the aspartic protease from HIV-1 has recently been related to the conformational flexibility of its structural scaffold. Here, we use a multistep strategy to investigate whether the same mechanism affects the functionality in the pepsin-like fold. (i) We identify the set of conserved residues by using sequence-alignment techniques. These residues cluster in three distinct regions: near the cleavage-site cavity, in the four beta-sheets cross-linking the two lobes, and in a solvent-exposed region below the long beta-hairpin in the N-terminal lobe. (ii) We elucidate the role played by the conserved residues for the enzymatic functionality of one representative member of the fold family, the human beta-secretase, by means of classical molecular dynamics (MD). The conserved regions exhibit little overall mobility and yet are involved into the most important modes of structural fluctuations. These modes influence the substrate-catalytic aspartates distance through a relative rotation of the N- and C-terminal lobes. (iii) We investigate the effects of this modulation by estimating the reaction free energy at different representative substrate/enzyme conformations. The activation free energy is strongly affected by large-scale protein motions, similarly to what has been observed in the HIV-1 enzyme. (iv) We extend our findings to all other members of the two eukaryotic and retroviral fold families by recurring to a simple, topology-based, energy functional. This analysis reveals a sophisticated mechanism of enzymatic activity modulation common to all aspartic proteases. We suggest that aspartic proteases have been evolutionarily selected to possess similar functional motions despite the observed fold variations.     

Zur Biogenese der Betacyane: Versuche mit [2-14C]-Dopaxanthin

On the biogenesis of betacyanins. Expaiments with [2-¹⁴C]-dopaxanthine Labelled dopaxanthine is prepared from betanin by a double exchange procedure replacing first its cyclodopa part by diethylamine and effecting the second exchange with 2-[¹⁴C]-dopa on the purified intermediate ‘DEA-betalain’; the specific activity delivered with the dopa allowed accurate determination of ? in the electronic spectrum of dopaxanthine (λ_max 488 nm, ? = 41.800). The C(2)-labelled dopaxanthine is incubated into the fruits of Opuntia bergeriana. The incorporation rates into betanin are found to correspond approximately to those obtained in earlier experiments with labelled dopa alone: Only 1--5% of the label showed up in the cyclodopa moiety of the betanin (which is isolated as cyclodopa-glucoside) whereas 99--95% of the radioactivity was associated with the betalamic acid part (recovered in form of indicaxanthine).     

The Influence of Sulfate‐Doping on the Nature of V Sites in VOx/TiO2 Catalysts

EPR, UV/Vis and FTIR spectroscopy as well as thermal analysis (TA/MS) were applied to study the influence of sulfate species present in the anatase support on the specific nature of VO_x species in supported VO_x/TiO₂ catalysts. Those sulfate species modify the local structure of the supported vanadyl species and lead to the formation of two types of VO²⁺ sites instead of only one type being formed on sulfate‐free anatase. EPR and FTIR spectroscopic measurements revealed that a part of the VO²⁺ species are directly bound to the surface sulfate species. By TA/MS it was found that SO₂ is released at lower temperature from VO_x/TiO₂ in comparison to the vanadium‐free support. The direct bonding between sulfate and VO_x species stabilizes the latter on the surface of VO_x/TiO₂ resulting in three effects: 1) a higher V site dispersion in comparison to sulfate‐free TiO₂, 2) a better resistance of surface vanadyls against diffusion into the bulk of the support and 3) a much faster reoxidation of reduced V sites than observed on sulfate‐free TiO₂.     

Preconcentration of lead,cadmium, copper and zinc in water at the pg g−1 level by non-boiling evaporation

An evaluation of the non-boiling evaporation technique for the preconcentration of Pb, Cd, Cu, Zn at the pg g^?1 level in water samples is presented. Various improvements were made to allow efficient control of contamination problems at these extremely low concentrations. They include the choice of FEP Teflon for the evaporation containers and the use of sophisticated cleaning, ageing and pre-conditionning procedures. Detailed calibration graphs were obtained down to the sub-pg g^?1 level by processing ultra-low concentration standards. This technique was then applied to the determination of these four metals in snow samples collected in Greenland and Antarctica.     

Absolute Configuration of 3-Substituted 1-Azabicyclo[2.2.1]heptanes

The l-azabicyclo[2.2.1]heptan-3-exo-ol ( 2 ) was resolved by fractional crystallisation of its hydrogen tartrate salts. The enantiomers (+)- and (?)- 2 were oxidised to the ketones (?)- 4 and (+)- 4 , respectively (Scheme). CD spectroscopy suggested that (?)- 4 possesses the (1R,4S)-configuration. This absolute configuration was confirmed by single-crystal X-ray diffraction of the derivative (+)-(1R,4R)-3-(1,3-dithian-2-ylidene)-1-azabicyclo [2.2.1]-heptane ((+)- 5 ).     

Characterisation of inhibitors of acetylcholinesterase by an automated amperometric flow-injection system

Acetylcholinesterase was immobilised on magnetic particles and integrated in a flow-injection system via a magnetic reactor. Enzyme activity was determined amperometrically using acetylthiocholine chloride as enzyme substrate. This system was applied to enzyme inhibition tests. Inhibition constants and lower detection limits were determined for carbofuran, paraoxon, malaoxon and paraoxon-methyl. The resulting data were compared to those obtained with a photometric test, i.e. the determination of thiocholine via its reaction with the Ellman's reagent 5,5'-dithio-bis-2-nitrobenzoic acid using the same flow system. As they correlated well to those reported for the native enzyme the flow-injection analysis device can be applied to automated determination and characterisation of enzyme inhibitors.     

Manipulation of the Electroosmotic Flow in Glass und PMMA Microchips with Respect to Specific Enzymatic Glucose Determinations

The determination of glucose in microfluidic chips made of glass or PMMA was used as a model for the combination of an enzymatic reaction with the separation of compounds. It was based on the enzymatic oxidation of glucose and the amperometric detection of hydrogen peroxide. Real samples frequently contain compounds, such as ascorbic acid, which may interfere with quantitative glucose determinations. Thus, electrophoretic separation of specific from unspecific signals was envisaged by applying electric fields which are also used to control the flow of liquid via electroosmotic effects. Surface charge densities of the capillaries influence the electroosmotic flow (EOF). They are dependent on the chip material and on the adsorption of components from the background electrolyte. Reversal of the EOF after addition of cetyltrimethylammonium bromide (CTAB) and an increase in EOF after addition of sodium dodecylsulfate (SDS) were observed at lower surfactant concentrations with the PMMA chips rather than with the glass chips. For both chip materials these concentrations were below the critical micelle concentration. Effective separation of H₂O₂ and ascorbic acid was achieved with low CTAB concentrations, which lead to a reduction, but not to a reversal of the EOF. Reversal of the EOF by higher CTAB concentrations or the increase in cathodic EOF by SDS accelerated ascorbic acid transportation and reduced the differences in migration times. Thus, for the specific determination of glucose, glucose oxidase was added together with low CTAB concentrations to the background electrolyte. This avoided interference from ascorbic acid, and data obtained from the analysis of fruit juices showed a good correlation to data obtained from a reference method.     

Pigment-Protein Interactions in the Antenna-Reaction Center Complex of Heliobacillus mobilis

Membrane fragments of Heliobacillus (Hc.) mobilis were characterized using resonance Raman (RR) spectroscopy in order to determine the configuration of the neurosporene carotenoid, the pigment-protein interactions of the bacteriochlorophyll (BChl) g molecules, and the Chl a-like chlorin pigments present in the antenna-reaction center complex constituting the photosynthetic apparatus. Using 363.8 nm excitation, the Raman contributions of the BChl g molecules were selectively resonantly enhanced over those of the carotenoid and the Chl a-like chlorin pigments. The RR spectrum of BChl g in these membranes excited at 363.8 nm exhibits bands at 1614 and 1688 cm^?1, which correspond to a C_aC_m methine bridge stretching mode and a keto carbonyl group stretching mode, respectively. Both of these bands are 16 cm^?1 wide (full width at half maximum, FWHM), indicating that a sole population of BChl g molecules is being enhanced at this excitation wavelength. The observed frequency of the C_aC_m stretching mode (1614 cm^?1) indicates that the bulk of BChl g molecules is pentacoordinated with only one axial ligand to the central Mg atom while that of the keto carbonyl stretching mode (1668 cm^?1) indicates that these groups are engaged in a hydrogen bond. This homogeneous population of BChl g molecules bound to the heliobacterial core polypeptides is in contrast to the heterogeneous population of Chl a molecules bound to the core polypeptides of the reaction center of photosystem I of Synechocystis 6803 as observed by the inhomogeneously broadened C₉ keto carbonyl band in its RR spectrum. The RR spectrum of the Chl a-like chlorin pigments in Hc. mobilis excited at 441.6 nm exhibits a broad keto carbonyl band (43 cm^?1 FWHM) with components at 1665, 1683 and 1695 cm^?1, indicating several populations of these pigments differing in their protein interactions at the level of the keto carbonyl group. Fourier transform (FT) pre-RR spectroscopic measurements of intact whole cells and membrane fragments at room temperature using 1064 nm excitation indicate that high quality vibrational spectra of the BChl g molecules can be obtained with no photodegradation. Low-temperature FT Raman spectra excited at 1064 nm reveals an inhomogeneously broadened 1665 cm^?1 band corresponding to the C₉ keto carbonyl stretching mode. Spectral deconvolution and second derivative analysis of this band reveal that it is comprised of components at 1665, 1682 and 1695 cm^?1, the latter two most likely arising from BChl g photoconversion products. Excitation using 885 nm to enhance the preresonance effect of the BChl g molecules yields an FT Raman spectrum where the keto carbonyl band at 1665 cm^?1 is narrow, as is the case in the Soret RR spectra, reflecting a sole population of BChl g molecules, which are engaged in an H bond. The RR spectrum of the neurosporene molecule in Hc. mobilis membranes excited at 496.5 nm is compared to that of 1,2-dihydroneurosporene bound in a cis configuration in reaction centers of Rhodopseudomona viridis and to that of the same carotenoid in its all-trans configuration extracted from these reaction centers in the presence of light. The similarity of this latter RR spectrum with that of neurosporene in the Hc. mobilis membranes indicates that it is bound in an all-trans configuration.     

Thermolytic carbonates for potential 5'-hydroxyl protection of deoxyribonucleosides

Thermolytic groups structurally related to well-studied heat-sensitive phosphate/thiophosphate protecting groups have been evaluated for 5'-hydroxyl protection of deoxyribonucleosides as carbonates and for potential use in solid-phase oligonucleotide synthesis. The spatial arrangement of selected functional groups forming an asymmetric nucleosidic 5'-O-carbonic acid ester has been designed to enable heat-induced cyclodecarbonation reactions, which would result in the release of carbon dioxide and the generation of a nucleosidic 5'-hydroxyl group. The nucleosidic 5'-O-carbonates 3-8, 10-15, and 19-21 were prepared and were isolated in yields ranging from 45 to 83%. Thermolytic deprotection of these carbonates is preferably performed in aqueous organic solvent at 90 degrees C under near neutral conditions. The rates of carbonate deprotection are dependent on the nucleophilicity of the functional group involved in the postulated cyclodecarbonation reaction and on solvent polarity. Deprotection kinetics increase according to the following order: 4 < 5 < 10 < 6 < 12 < 7 < 13 < 8 < 14 congruent with 19-21 and CCl4 < dioxane < MeCN < t-BuOH < MeCN:phosphate buffer (3:1 v/v, pH 7.0) < EtOH:phosphate buffer (1:1 v/v, pH 7.0). Complete thermolytic deprotection of carbonates 7, 8, 13, and 14 is achieved within 20 min to 2 h under optimal conditions in phosphate buffer-MeCN. The 2-(2-pyridyl)amino-1-phenylethyl and 2-[N-methyl-N-(2-pyridyl)]aminoethyl groups are particularly promising for 5'-hydroxyl protection of deoxyribonucleosides as thermolytic carbonates.