Size does matter! Label-free detection of small molecule–protein interaction

This review is focused on methods for detecting small molecules and, in particular, the characterisation of their interaction with natural proteins (e.g. receptors, ion channels). Because there are intrinsic advantages to using label-free methods over labelled methods (e.g. fluorescence, radioactivity), this review only covers label-free techniques. We briefly discuss available techniques and their advantages and disadvantages, especially as related to investigating the interaction between small molecules and proteins. The reviewed techniques include well-known and widely used standard analytical methods (e.g. HPLC-MS, NMR, calorimetry, and X-ray diffraction), newer and more specialised analytical methods (e.g. biosensors), biological systems (e.g. cell lines and animal models), and in-silico approaches.     

Nitrostyrene Derivatives of Adenosine 5′-Glutarates Modified with an Alkyl Spacer and their inhibitory activity on epidermal growth factor receptor protein tyrosine kinase

β-Nitrostyrene derivatives of adenosine 5′-glutarates are potent and selective bisubstrate-type inhibitors of the epidermal growth factor receptor protein tyrosine kinase (EGF-R PTK). In an attempt to improve the inhibitory activity, this type of compounds was modified with alkyl spacers of varying length between the nitrostyrene and the glutaryl units. The spacers consisted of 1, 3, 4, and 5 atoms to give compounds of the benzyl, oxyethyl, oxypropyl, and oxybutyl series, respectively (Schemes 1 and 2). Adenosine 5′-esters were prepared in the benzyl and oxypropyl series only. Compared to the compounds in the parent series without spacer (IC₅₀ = 0.7–12 μM ), most of the modified compounds inhibited the EGF-R PTK only marginally or were inactive (IC₅₀ ≥ 100 μM ). The only exceptions were the free acids 19 and 20 with IC₅₀ values of ca. 5 μM . It is noteworthy that esterification of these two hydrogen glutarates with either MeOH or adenosine yielded inactive compounds, which is in contrast to the corresponding substances without spacers.     

Identification of polyoxypregnane glycosides from the stems of Marsdenia tenacissima by high-performance liquid chromatography/tandem mass spectrometry

A facile method based on high-performance liquid chromatography coupled with electrospray ionization tandem mass spectrometry (HPLC/(+)ESI-MSⁿ) has been established for the analysis of polyoxypregnane glycosides in the stems of Marsdenia tenacissima. The data reveals the ability of MSⁿ in the structural elucidation of polyoxypregnane glycosides including the nature of the polyoxypregnane core, the kinds of the substituents and the types of sugar residues. Offline Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) is also performed to assign accurate elemental compositions. In this study, eighteen polyoxypregnane glycosides have been investigated. Among these components, five compounds are unambiguously identified as Marsdenoside K, Tencissoside A, B, C and D; two compounds are established as novel compounds based on mass spectral data; and the other eleven compound's structures are tentatively proposed. Furthermore, breakdown curves are constructed to distinguish five pairs of isomers among these eighteen compounds. As far as our knowledge, this is the first report on identification of polyoxypregnane glycosides in the stems of M. tenacissima by HPLC/ESI-MSⁿ directly, which could save time and material consuming efforts in traditional phytochemistry analyses.     

Bilden sich aus Pentafulven und Cyclopentadien [6+4]-Cycloaddukte??

Does [6+4] Cycloaddition between Pentafulvene and Cyclopentadiene Take Place? Reaction of a 1:1 mixture of cyclopentadiene (CPD) and pentafulvene ( 1a ) at 20° gives a complex mixture. The low-molecular-weight part mainly consists of pure and mixed dimers (ca. 73 %) besides corresponding trimers (ca. 20%) and some corresponding oligomers according to GC/MS investigations (Fig. 1). The 3 predominant ‘mixed dimers’ between CPD and 1a have been separated, and structures 4 – 6 (Scheme 3) are assigned according to 400- and 600-MHz ¹H-NMR investigations. These results show that HOMO(CPD)-LUMO(fulvene) interactions are important in pentafulvene cycloadditions. Dimer 6 results from [6+4] cycloaddition followed by [1,5]-H shifts.     

Synthese monodisperser linearer und cyclischer Oligomere der (R)-3-Hydroxybuttersäure mit bis zu 128 Einheiten

Monodisperse Linear and Cyclic Oligo[(R)-3-hydroxybutanoates] Containing up to 128 Monomeric Units Using benzyl ester/(tert-butyl)diphenylsilyl ether protection, (COCl)₂/pyridine esterification conditions, and a fragment-coupling strategy (with H₂/Pd-C debenzylation and HF · pyridine desilylation), linear oligomers of (R)-3-hydroxybutanoic acid (3-HB) containing up to 128 3-HB building blocks (mol. weight > 11 000 Da) are assembled (Schemes 1,2,5, and 6). In contrast to the previously employed protecting-group combination, and due to the low-temperature esterifying conditions, this procedure leads to monodisperse oligomers: all steps occur without loss of single 3-HB units. The product oligomers with two, one, and no terminal protecting groups (mostly prepared in multi-gram amounts) are characterized by all standard spectroscopic methods, especially by mass spectroscopy (Figs. 2 and 3), by their optical activity, and by elemental analyses. Cyclization of the oligo[(R)-3-hydroxybutanoic acids] with up to 32 3-HB units, using thiopyridine activation and CuBr₂ for the ring closure, produces oligolides consisting of up to 128 ring atoms (Scheme 7). Mixed oligolides containing 3-HB and (R)-3-hydroxypentanoic units are prepared from the corresponding linear trimers, using Yamaguchi's method for the ring closure (Scheme 8 and Fig.4 (X-ray crystal structures of two folded conformers)). Comparisons of melting points (Table 1), of [α] values (Tables 2 and 3), of ¹H-NMR coupling constants (Table 3), and of molecular volume/hydroxyalkanoate unit (Table 4) of linear and cyclic oligomer derivatives and of the high-molecular-weigh polymer show that the monodisperse oligomers appear to be surprisingly good models for the polymer. Besides this insight, our synthesis is supplying the samples to further test the role of P(3-HB) (ca. 140 units) as a component of complexes forming channels through cell-wall phospholipid bilayers.     

John Napiers Trigonometrie – ein Blick zurück

Zusammenfassung  Dieser Artikel gibt einen überblick über Napiers Beitr?ge zur sph?rischen Trigonometrie, wobei die dafür notwendigen sachlichen und historischen Grundlagen weitgehend bereitgestellt werden. Da diese Beitr?ge in der Literatur trotz ihrer erheblichen Bedeutung ganz im Schatten von Napiers Logarithmen stehen, erscheint eine solche Zusammenschau gerechtfertigt. Auch kommen einige neue oder kaum bekannte Einzelheiten zur Sprache. Mathematics subject classification (2000)  01A45 · 51-03     

A nondisplaceable Lagrangian torus in T*S2

We show that the Lagrangian torus in the cotangent bundles of the 2‐sphere obtained by applying the geodesic flow to the unit circle in a fiber is not displaceable by computing its Lagrangian Floer homology. The computation is based on a symmetry argument. © 2007 Wiley Periodicals, Inc.     

Erratum to: A Variational Approach to Givental’s Nonlinear Maslov Index

In this article we consider a variant of Rabinowitz Floer homology in order to define a homological count of discriminant points for paths of contactomorphisms. The growth rate of this count can be seen as an analogue of Givental’s nonlinear Maslov index. As an application we prove a Bott–Samelson type obstruction theorem for positive loops of contactomorphisms.