Insight into Signal Response of Protein Ions in Native ESI-MS from the Analysis of Model Mixtures of Covalently Linked Protein Oligomers

Native ESI-MS is increasingly used for quantitative analysis of biomolecular interactions. In such analyses, peak intensity ratios measured in mass spectra are treated as abundance ratios of the respective molecules in solution. While signal intensities of similar-size analytes, such as a protein and its complex with a small molecule, can be directly compared, significant distortions of the peak ratio due to unequal signal response of analytes impede the application of this approach for large oligomeric biomolecular complexes. We use a model system based on concatenated maltose binding protein units (MBPn, n = 1, 2, 3) to systematically study the behavior of protein mixtures in ESI-MS. The MBP concatamers differ from each other only by their mass while the chemical composition and other properties remain identical. We used native ESI-MS to analyze model mixtures of MBP oligomers, including equimolar mixtures of two proteins, as well as binary mixtures containing different fractions of the individual components. Pronounced deviation from a linear dependence of the signal intensity with concentration was observed for all binary mixtures investigated. While equimolar mixtures showed linear signal dependence at low concentrations, distinct ion suppression was observed above 20 μM. We systematically studied factors that are most often used in the literature to explain the origin of suppression effects. Implications of this effect for quantifying protein–protein binding affinity by native ESI-MS are discussed in general and demonstrated for an example of an anti-MBP antibody with its ligand, MBP.

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Quantitative evaluation of mechanosensing of cells on dynamically tunable hydrogels

Thin hydrogel films based on an ABA triblock copolymer gelator [where A is pH-sensitive poly(2-(diisopropylamino)ethyl methacrylate) (PDPA) and B is biocompatible poly(2-(methacryloyloxy)ethyl phosphorylcholine) (PMPC)] were used as a stimulus-responsive substrate that allows fine adjustment of the mechanical environment experienced by mouse myoblast cells. The hydrogel film elasticity could be reversibly modulated by a factor of 40 via careful pH adjustment without adversely affecting cell viability. Myoblast cells exhibited pronounced stress fiber formation and flattening on increasing the hydrogel elasticity. As a new tool to evaluate the strength of cell adhesion, we combined a picosecond laser with an inverted microscope and utilized the strong shock wave created by the laser pulse to determine the critical pressure required for cell detachment. Furthermore, we demonstrate that an abrupt jump in the hydrogel elasticity can be utilized to monitor how cells adapt their morphology to changes in their mechanical environment.     

Practical synthesis of (2'R)-2'-deoxy-2'-C-methyluridine by highly diastereoselective homogeneous hydrogenation

Diastereoselective hydrogenation of 2'-deoxy-2'-exo-methyleneuridine was carried out under homogeneous conditions using a low loading of a chiral Rh catalyst. This, coupled with improvements in the synthesis of the substrate, allowed the smooth pilot plant preparation of the title compound on >10 kg scale.     

Synthesis and reactivity of [2]disilaniobocenophanes

The paramagnetic ansa-niobocene [(Me₂Si)₂(η⁵-C₅H₄)₂NbCl₂] (1) was obtained from the reaction of Li₂[(Me₂Si)₂(C₅H₄)₂] with [NbCl₄(thf)₂]. Further treatment with Li[AlH₄] yielded [(Me₂Si)₂(η⁵-C₅H₄)₂NbH₃] (3), which is prone to decomposition within a few days at room temperature both in solution and in the solid-state, thus affording primarily an insoluble black material. However, after heating or irradiation of a solution of 3 small quantities of the dimeric niobium hydride species, [(Me₂Si)₂{μ-(η¹:η⁵-C₅H₃)}(η⁵-C₅H₄)NbH]₂ (4), were isolated and characterized by X-ray diffraction.     

A survey of the potential energy surface for the (benzene)13 cluster

We report on a survey of the potential energy surface for the 13-molecule benzene cluster, (C(6)H(6))(13), bound by an atom-atom intermolecular potential developed from first principles. The potential, which has an anisotropic repulsion term, is found to support distinct pairs of structures of C(3), C(i), and S(6) symmetry as low-lying minima, including a C(3) global minimum. The organisation of the low-lying region of the potential energy surface suggests that one of the S(6) structures is likely to act as a kinetic trap, hindering efficient relaxation to the global minimum, in agreement with the hypothesis that two isomers coexist in this system, suggested by spectroscopic experiments.     

Study on actuating voltage and switching time of a MOEMS optical switch

The micro-opto-electro-mechanical systems (MOEMS) optical switch with slant lower electrode and with torsion beam on silicon is designed and analyzed theoretically. Based on the torsion dynamics theory, the technique and relative formula are presented for the first time for analyzing the actuating voltage and the switch time. The optimized results of the structural parameters are compared between this technique and the finite element modeling (FEM). Finally, the difference between the experimental results and theoretical data is discussed.