A novel phosphoramidite method for automated synthesis of oligonucleotides on glass supports for biosensor development

Two protocols for functionalization of glass supports with hexaethylene glycol (HEG)-linked oligonucleotides were developed. The first method (standard amidite protocol) made use of the 2-cyanoethyl-phosphoramidite derivative of 4,4′-dimethoxytrityl-protected HEG. This was first coupled to the support by standard solid-phase phosphoramidite chemistry followed by extension with a thymidylic acid icosanucleotide. Stepwise addition of the linker phosphoramidite graduated at 1% (relative to the total sites available) perstep at 50°C resulted in an optimal yield of immobilized oligonucleotides at a density of 2.24 × 10¹⁰ strands/mm². This observed loading maximum lies well below the theoretical maximum loading owing to nonspecific adsorption of HEG on the glass and subsequent blocking of reactive sites. Surface loadings as high as 3.73 × 10¹⁰/mm² and of excellent sequence quality were achieved with a reverse amidite protocol. The support was first modified into a 2-cyanoethyl-N,N-diisopropylphosphoramidite analog followed by coupling with 4,4′-dimethoxytrityl-protected HEG. This protocol is conveniently available when using a conventional DNA synthesizer. The reverse amidite protocol allowed for control of the surface loading at values suitable for subsequent analytical applications that make use of immobilized oligonucleotides as probes for selective hybridization of sample nucleic acids of unknown sequence and concentration.     

Silica-Based and Transition Metal-Based Inorganic-Organic Hybrid Materials—A Comparison

Organically substituted metal alkoxides can be prepared by reaction of the parent alkoxides with complexing organic compounds. The chemical and structural consequences of such substitutions are discussed in this article. Examples are given showing how functional organic moieties, such as polymerizable groups, can be incorporated into sol-gel materials via the complexing ligands. Major structural differences between silica-based and metal-based hybrid materials originate from the different charge/coordination number ratios of silicon and most metals. This results in a high tendency for the molecular building blocks to aggregate. In many cases, metal oxide clusters are formed which are capped by the organic ligands. Such surface-modified clusters are themselves very valuable condensed matter units for materials syntheses.     

Automated multiple-layer spotting for matrix-assisted laser desorption/ionization time-of-flight mass spectrometry of synthetic polymers utilizing ink-jet printing technology

Recently, a new multiple-layer matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOFMS) sample spotting technique for poly(ethylene glycol), offering improved analysis possibilities, was described. In this contribution the application of ink-jet printing to automated, multiple-layer MALDI-TOFMS sample preparation of synthetic polymers is presented, allowing accurate deposition of matrix, additive and analyte solutions. The new sample preparation technique was evaluated for poly(ethylene glycol) as well as poly(methyl methacrylate) standards, and optimized settings for both synthetic polymers have been obtained.     

Effects of methyl groups on the geometry and conformational equilibrium of 1,3-dioxanes

The geometries and energies of polymethyl-1,3-dioxanes were studied by molecular mechanics calculations. Buttressing effects of the Me groups are discussed. The chair/twist conformational equilibrium of 1,3-dioxanes having two syn-axial Me groups in the chair were calculated, and a twist form (the 1,4-twist) is found to be more stable than the chair only for 9 and 14, chair and 2,5-twist form are of comparable energies for 10 and 13, and the chair is considerably favored in 11 and 12. The chair/1,4-twist energy difference of 1 was calculated to be only 16.4 kJ mol^?1. Ring inversion of 1 goes through a transition state with C-C-C-O coplanar with a calculated activation enthalpy of 28.3 kJ mol^?1.     

η-Allylpentacarbonylvanadium

The preparation of η-C₃H₅V(CO)₅ from allyl chloride and sodium hexacarbonylvanadate (–I) is reported. Composition, IR and NMR spectra are in accordance with a π-bonded C₃H₅-moiety; the preparation has been extended to give complexes with substituted allyl groups. Furthermore (1-3-η-2-butenyl)pentacarbonylvanadium can be obtained by the addition of butadiene to HV (CO)₆.     

Massenspektrometrische Beobachtungen und chemische Transportexperimente mit den Systemen VCl3/Al2Cl6 und VCl2/Al2Cl6

Mass Spectroscopic Observations and Chemical Transport Experiments with the Systems VCl₃/Al₂Cl₆ and VCl₂/Al₂Cl₆ By mass spectrometry the equilibrium VCl_3,s + 0.5 Al₂Cl_6,g ? VAlCl_6,g has been determined: ΔH°(298) = 25.6(±0.5) kcal; ΔS°(298) = 23.0(±3) cal/K, ΔCp (assumed) = ?4 cal/K. This is approximately in agreement with results determined by ligand field spectroscopy by ANUNDSKÅS and ØYE (A. and Ø.). For the dimerization of VCl_3,g values for ΔH and ΔS have been derived. The molecule VAl₂Cl₉ assumed by A. and Ø. could not been observed by mass spectrometry. For the VCl₂/Al₂Cl₆ complex, observed by chemical transport, A. and Ø. give the formula VAl₃Cl₁₁. This molecule could not been observed by mass spectrometry. This suggests a smaller concentration, compared with the results of A. and Ø. Stabilization of VCl_2,s (by metal-nietal-bonds) shifts the reaction to the left, whith explains the lower complex concentration as well as the larger molecular weight of the complex. With chlorides stabilized by stronger metal-metal bonds (MoCl₃, MoCl₂, Nb₃Cl₈) AlCl₃ complexes are not formed in observable concentrations. The chemical transport of VCl₂ with Al₂Cl₆ needs relatively high temperatures (973 → 873 K). In this case the addition of SiCl₄ hinders the attack of the quartz ampoule by Al₂Cl₆. Using a VCl₃ + VCl₂ mixture, VCl₃ is transported by Al₂Cl₆ (673 → 623 K) into the colder region. If afterwords the ampoule is reversed, VCl₃ again moves into the colder region, but the thermal decomposition of VCl₃ at the same time causes that a VCl₂-residue remains in the hot region.     

Die Gasmolekeln Pd2Al2Cl10 und PdAlCl5 als Begleiter von PdAl2Cl8

Gas Molecules Pd₂Al₂Cl₁₀ and PdAlCl₅ as Accompanists of PdAl₂Cl₈ Mass spectrometric observations using a double cell showed that the reaction of gaseous Al₂Cl₆ with solid PdCl₂ besides the known gaseous complex PdAl₂Cl₈ gives PdAlCl₅ and the unexpected complex Pd₂Al₂Cl₁₀. For the equilibrium (with ΔCp? ?1 cal/K) ΔH°(298) = 7.5 kcal/Mol and ΔS°(298) = 5.3 ± 2 cl have been obtained.     

Site-directed molecular assembly on templates structured with electron-beam lithography

We describe a simple method for patterning biomolecular films on surfaces with high resolution. A conventional polymeric resist is structured by electron-beam lithography. The exposed and developed patterns are then used for the directed self-assembly (SA) of a first molecule from solution. Removal of the remaining resist allows the SA of a second species. We illustrate the potential of the approach by assembling on gold (Au) substrates two alkanethiols of contrasting terminal functionality. The patterns have dimensions from the micrometer range down to 40 nm and an edge resolution of 3.5 nm.     

Chlorthionitrenkomplexe des Wolframs Die Kristallstruktur von [WCl4(NSCl)]2

Chlorothionitrene Complexes of Tungsten. Crystal Structure of [WCl₄(NSCl)]₂ Tungsten hexachloride reacts with trithiazyl chloride, (NSCl)₃, yielding the chlorothionitrene complex [WCl₄(NSCl)]₂, from which AsPh₄[WCl₅(NSCl)] can be obtained by reaction with AsPh₄Cl. Both complexes are characterized by their i.r. spectra. The crystal structure of [WCl₄(NSCl)]₂ was determined and refined with X-ray diffraction data (1059 reflexes, R = 0.055). It crystallizes in the monoclinic space group P2₁/n with the lattice constants a = 1523, b = 904, c = 583 pm and β = 91.35°. In the unit cell there are two centrosymmetric [WCl₄(NSCl)]₂ molecules in which the W atoms are linked via two chloro bridges; short and long W? Cl distances (244 and 265 pm) alternate in the W₂Cl₂ ring, the NSCl groups are found in the trans positions to the longer W? Cl bonds. The WNS bond angle (175°) and short bond distances correspond to a formulation .