Approaching exponential growth with a self-replicating peptide

Self-replicating peptide systems hold great promise for a wide range of technological applications, as well as to address fundamental questions pertaining to the molecular origins of life. The development of self-replicating compounds capable of high efficiency, however, has remained elusive. Here we disclose a successful strategy whereby modulation of coiled-coil stability results in remarkable catalytic efficiency for self-replication. By shortening the peptide to the minimum length necessary for coiled-coil formation a highly efficient self-replicating system was obtained due to very low background reaction rates, bringing the efficiency close to naturally occurring enzymes.     

On the nature of the fluorescent state of methylated indole derivatives

A quantitative study has been made of the solvent effects on the fluorescence properties of 1- and 3-methyl indole, with the aim of further understanding the origin of the unusually large Stokes shift in polar solvents. For the derivatives considered here the fluorescence transition probability is decreased in solvents of moderate and high polarities, and the spectrum shifts to the red. The data (in two-component, solute and solvent, systems) can be interpreted on the basis of the stabilisation, by solvent-solute relaxation, of a state with an increased charge-transfer character, relative to the initially excited state. Å consideration of the decay data for other indole derivatives suggests that this state has its origin in the ¹L₄ state (S₂ in non-polar media). Thus we conclude that the appropriate label of the fluorescent state of many substituted indoles in polar solvents is ¹L_a/CT. This is consistent with the observed solvent, temperature, time and substituent dependence of the decay kinetics of these derivatives.     

Synthesis and DNA binding properties of pyrrole amino acid-containing peptides

Dimers of the pyrrole amino acid (Paa), 5-(aminomethyl)pyrrole-2-carboxylic acid, and its derivatives having Lys anchored on N- and C-termini bind in the minor groove of DNA with considerable apparent binding affinities. When the Lys unit is attached to the C-terminus, the resulting ligand binds to ds-DNA with twice the affinity, of the order of 10⁵, than the one carrying two positive charges at the same end.     

Intramolecular nitrone cycloaddition reaction on carbohydrate-based precursors: application in the synthesis of spironucleosides and spirobisnucleosides

A simple synthesis of chiral spironucleosides and spirobisnucleosides is described. Intramolecular 1,3-dipolar nitrone cycloaddition reaction of d-glucose-derived precursors having olefin at C-3 and nitrone at C-5, C-1, or C-2 (in nor-series) furnished bisisoxazolidinospirocycles 4-7, 11, and 12 in good yields. Reductive ring opening of the isoxazolidine moieties in 4-6 followed by construction of a nucleoside base upon the generated amino groups smoothly yielded spirobisnucleosides 17 and 18 and spironucleosides 20 and 21.     

Amino Acid based cationic surfactants in aqueous solution: physicochemical study and application of supramolecular chirality in ketone reduction

The present study provides a molecular understanding of the origin of the chirality in aqueous micelles and its correlation with the proficiency of stereoselective ketone reduction. The effects of varied headgroup architecture on the surface-active properties as well as on other microstructural parameters were studied and correlated to the structural differences of these naturally occurring amino acid containing surfactants (1-4). Micropolarity sensed by pyrene showed that the micelles prepared using 1-4 are mostly hydrated; particularly large headgroup size surfactant produces more polar environment. A theoretical study was done to quantify the varied spatial dissymmetry for all four surfactants. Asymmetric reduction of prochiral ketones was carried out at the aqueous micellar interface of these chiral amphiphiles by exploiting the supramolecular chirality as evidenced from a circular dichroism study. The enantioselectivity of the reduction process is rationally improved through increase in spatial dissymmetry and steric constraint imposed at the micellar interface by the polar head of surfactants.     

Extraction of manganese(II) with dithizone and potassium thiocyanate on foam sorbents for spectrophotometric determination in silicates

A method for selective extraction of Mn(II) with dithizone and potassium thiocyanate has been described. The method involves formation of a Mn(II)-thiocyanate-dithizone complex in a hexamine medium containing potassium thiocyanate (2.8M), dithizone (5.5-6.5 x 10(-5)M) and hydroxylamine hydrochloride (0.25%) at pH approximately 6 followed by extraction of the complex on polyurethane foam using batch squeezing mode within 1 hr. The sorbed Mn-thiocyanate-dithizone complex is eluted with acetone and made alkaline with 0.5 ml of a stabilizer solution (19 ml 2M NH(3) solution + 1 ml 5% hydroxylamine hydrochloride). The absorbance of the solution is measured at 506 nm. The adverse effect due to Pb may be obviated by separating the Pb as the sulphate during decomposition of sample and that due to iron may be removed before extraction of Mn by any suitable method. The other interfering elements (Cd, Zn, Ni, Co, Cu, etc.) are masked with KCN (6 x 10(-3)M optimum) solution. The method obeys Beer's Law from 0.1 to 2.0 mug Mn/ml. The method has been applied to various silicates, carbonates and glasses.     

Low-pressure collisional narrowing in CO2

We report the observation of collisional narrowing of the Q branch of the Raman spectrum for the (000) → (100) transition in CO₂ at very low pressures. The minimum linewidth is reached at ≈250 Torr. An estimate for the difference in rotational constants of the (100) state and the ground state is obtained. The narrowing of the linewidth and the changes in line-shape are interpreted in terms of velocity changing collisions and rotationally inelastic collisions between the CO₂ molecules.     

Partitioning of quencher ions in the micellar microenvironment of polyoxyethylene nonyl phenol

This paper has explored the quenching of fluorescence of the dye safranine T (ST) by the inorganic cations viz Cu2+, Co2+, Ni2+ and Mn2+ in micellar solutions of the surfactant dioxyethylene nonyl phenol (Igepal CO-210), pentaoxyethylene nonyl phenol (Igepal CO-520) and dodecaoxyethylene nonyl phenol (Igepal CO-720). The quenching results have been calculated in light of stern volmer equation (SV) to evaluate the extent of interaction between the fluorophore (ST) and quencher. The average concentration of the quencher ions in the micelle have been determined. The quenching efficiency of ST by inorganic ions in micellar medium is lower than that in aqueous medium. The results show that the ions get partitioned in the micellar medium. The values of the partition coefficient of the ions decrease with increase in HLB value and number of oxyethylene groups in Igepal.     

Effects of injector geometry and sample matrix on injection and sample loading in integrated capillary electrophoresis devices

The double-T injector design employed in many microchip capillary electrophoresis devices allows for the formation of very small (50-500 pL) sample plugs for subsequent analysis on-chip. In this study, we show that sample plugs formed at the channel junction can be geometrically defined. The channel width and injector symmetry prove to be of great importance to good performance. A unique pushback of solvent into the side channels can be induced when the side channels have a very low resistance to flow, and this helps to better define the injected sample plug. Samples and running buffers of differing ionic strength (e.g., 10 mM KCl buffer and 20 mM KCl sample) can yield widely variable results in terms of plug shape and amount injected (variations of 1.5 to 10x). Applying bias voltages to all the intersecting channels aids in controlling the plug shape. However, when the ionic strengths of buffer and sample are not matched, the actual amount injected (up to 10x variations) can be inconsistent with the appearance of the plug formed in the injector (up to only 30 % variations). Operating at constant pH and ionic strength produced the most consistent results. This report examines the effects of altering the injector geometry and solution ionic strengths, and presents the results of using bias voltages to control plug formation. The observed results should provide a benchmark for modeling of the fluid dynamics in channel intersections.     

Rearrangement correction to higher polarizabilities of two-electron systems

In this paper we include the rearrangement correction (discussed in the preceding paper) in a coupled Hartree–Fock (CHF) calculation of atomic hyperpolarizabilities and other related properties. We have studied the effect of these corrections on properties like electric dipole hyperpolarizabilities, uniform electric field quadrupole polarizabilities and shielding factors in two-electron ions and have noticed significant changes in the computed values over the CHF results.