Adaption of a fragment analysis technique to an automated high-throughput multicapillary electrophoresis device for the precise qualitative and quantitative characterization of microbial communities

The analysis of microbial communities is of increasing importance in life sciences and bioengineering. Traditional techniques of investigations like culture or cloning methods suffer from many disadvantages. They are unable to give a complete qualitative and quantitative view of the total amount of microorganisms themselves, their interactions among each other and with their environment. Obviously, the determination of static or dynamic balances among microorganisms is of fast growing interest. The generation of species specific and fluorescently labeled 16S ribosomal DNA (rDNA) fragments by the terminal restriction fragment length polymorphism (T-RFLP) technique is a suitable tool to overcome the problems other methods have. For the separation of these fragments polyacrylamide gel sequencers are preferred as compared to capillary sequencers using linear polymers until now because of their higher electrophoretic resolution and therefore sizing accuracy. But modern capillary sequencers, especially multicapillary sequencers, offer an advanced grade of automation and an increased throughput necessary for the investigation of complex communities in long-time studies. Therefore, we adapted a T-RFLP technique to an automated high-throughput multicapillary electrophoresis device (ABI 3100 Genetic Analysis) with regard to a precise qualitative and quantitative characterization of microbial communities.     

Torsionsabhängige Beiträge zur Spin-Bahn-Kopplung in organischen Molekülen

Zusammenfassung Die Spin-Bahn-Kopplung der niedrigen elektronischen Anregungszustände von organischen Molekülen wird untersucht. Es wird gezeigt, daß die Zerstörung der aromatischen Ebene durch Torsionen oder Schwingungen zu nicht-verschwindenden Zweizentrenbeiträgen führt. Am Beispiel des Triphenylmethyl-Kations wird mit Hilfe der LCAO MO SCF-Methode die Größenordnung der auftretenden Wechselwirkungen ermittelt. Diese haben wahrscheinlich großen Einfluß auf die strahlungslosen Prozesse in Molekülen mit leicht beweglichen Gruppen.

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Spin-orbit coupling of the lower excited electronic states of organic molecules has been investigated. It is shown that any destruction of the aromatic plane through torsions or vibrations leads to non-vanishing contributions from two-centre integrals. The order of magnitude of this type of interactions is determined for the triphenylmethyl-cation with the aid of the LCAO MO SCF method. These interactions probably have much influence on radiationless transitions in molecules containing mobile groups.

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Résumé Etude du couplage spin-orbite dans les états électroniques exités les plus bas des molécules organiques. Toute non planéité aromatique créée par torsions ou vibrations entraîne une contribution non nulle de la part des intégrales bicentriques. L'ordre de grandeur de ce type d'interaction est detérminé, à l'aide de la méthode L.C.A.O. M.O. SCF, pour le cation triphenylméthyle. Ces interactions ont probablement beaucoup d'influence sur les transitions non radiatives dans les molécules contenant des groupements mobiles.

     

Interannular communication in the radical anions of bis-cyclooctatetraene systems

[reaction: see text] The room-temperature potassium reduction of 1,2-bis-cyclooctatetraeneoxypropane yields two different regio-spin isomer anion radicals in equilibrium (COT-O-C(Me)HCH(2)CH(2)-O-COT(*)(-) = (*)(-)COT-O-C(Me)HCH(2)CH(2)-O-COT) that is shifted far to the right. The presence of the unreduced ring perturbs the spin density on the reduced ring. Addition of more electrons generates the diradical dianion ((*)(-)COT-O-C(Me)HCH(2)CH(2)-O-COT(*)(-)), and the anion radical on the secondary side splits the degeneracy of the psuedo-ortho protons of the anion radical on the primary side.     

Systematische untersuchungen über das verhalten von organozinnverbindungen gegenüber flüssigem schwefeldioxid II. Reaktionen von arylstannanen mit flüssigem SO2

The behaviour of tetraarylstannanes, R₄Sn (R = C₆H₅CH₂, C₆H₅, o-, m-, p-CH₃C₆H₄), towards SO₂ under various conditions has now been studied in detail. Compared to aliphatic tetraorganostannanes, the variability of the reaction products is much less, so that in nearly all cases only disulfinates, R₂Sn(O₂SR)₂, are formed. The aromatic tin(IV) mono-, di- and tri-sulfinates are also obtained by metathetical reaction between the corresponding organotin halides and sodium sulfinates. A unique feature of triaryltin chlorides, R₃SnCl (R = C₆H₅, o-, m-, p-CH₃C₆H₄), is their disproportionation in liquid SO₂ leading to disulfinates, R₂Sn(O₂SR)₂, and dichlorides, R₂SnCl₂. (p-CH₃C₆H₄)₂SnCl₂, under more efficient conditions, also accepts SO₂ forming (p-CH₃C₆H₄SO₂)₂SnCl₂. The structural investigations of the newly prepared compounds are carried out on the basis of their IR and ¹H NMR spectra.     

Untersuchungen an Stickstoff—Jod-Verbindungen. VII. Das IR-Spektrum des Stickstofftrijodid-1-Ammoniaks im Bereich der N–J-Grundschwingungen und Kraftkonstanten der N–J-Bindungen

Studies on nitrogen iodine compounds. VII. The IR spectrum of nitrogen triiodide-1 ammonia in the range of N—I fundamental vibrations and the valence force constants of the N—I bonds New infrared spectra in the region 33—600 cm^?1 of ¹⁴NI₃ · ¹⁴NH₃, ¹⁵NI₃ · ¹⁵NH₃ and ¹⁴NI₃ · pyridine, respectively, have been obtained. In addition, the infrared spectrum of ¹⁴NI₃ · ¹⁴ND₃, which has been prepared for the first time, was obtained. All absorption frequencies can be coordinated on the ground of the molecule model for the NI₃ scaffold with 5 atoms Z₂XY₂ of the symmetry C_2v which has been proved by X ray examination. A set of force constants has been calculated by approximation. The various nitrogeniodine valence force constants are discussed.     

Zur Längenberechnung der Torsion äusserer Potenzen

Let R be a noetherian ring of dimension d and M a finitely generated R-module of homologic dimension less or equal to one. Assume further that M has a rank r, which equals d or (in case d>0) d?1 and that the r-th Fitting-ideal \(\vartheta _r (M)\) of M has grade ?d. Then the torsion-submodule of the d-th exterior power of M and the module \(R/\vartheta _r (M)\) are equivalent.     

Influence of Test Specimen Geometry and Water Soaking on the In Vitro Cytotoxicity of Orthocryl®, Orthocryl® LC,Loctite® EA 9483 and Polypropylene

Depending on their composition, plastics have a cytotoxic potential that needs to be evaluated before they are used in dentistry, e.g., as orthodontic removable appliances. Relevant guidelines set out requirements that a potential new resin in the medical field must meet, with a wide scope for experimental design. In the present study, test specimens of different geometries consisting of varying polymers (Orthocryl^®, Orthocryl^® LC, Loctite^® EA 9483, Polypropylene) were soaked for different periods of time, then transferred to cell culture medium for 24 h, which was subsequently used for 24-h cultivation of A549 cells, followed by cytotoxicity assays (WST-1, Annexin V-FITC-propidium iodide (PI) flow cytometry). In this context, a reduction in the cytotoxic effect of the eluates of test specimens prepared from Orthocryl^® LC and Loctite^® EA 9483 was particularly evident in the Annexin V-FITC-PI assay when the soaking time was extended to 48 h and 168 h, respectively. Consistent with this, a reduced release of potentially toxic monomers into the cell culture medium, as measured by gas chromatography-mass spectrometry, was observed when the prior soaking time of test specimens of all geometries was extended. Remarkably, a significant increase in cytotoxic effect was observed in the WST-1 assay, which was accompanied by a higher release of monomers when the thickness of the test sample was increased from 0.5 to 1.0 mm, although an elution volume adapted to the surface area was used. However, further increasing the thickness to 3.0 mm did not lead to an increase in the observed cytotoxicity or monomer release. Test specimens made of polypropylene showed no toxicity under all test specimen sizes and soaking time conditions. Overall, it is recommended to perform toxicity studies of test specimens using different geometries and soaking times. Thereby, the influence of the different specimen thicknesses should also be considered. Finally, an extension of the test protocols proposed in ISO 10993-5:2009 should be considered, e.g., by flow cytometry or monomer analysis as well as fixed soaking times.