Active site mapping of 2-deoxy-scyllo-inosose synthase, the key starter enzyme for the biosynthesis of 2-deoxystreptamine. Mechanism-based inhibition and identification of lysine-141 as the entrapped nucleophile

A key enzyme in the biosynthesis of clinically important aminoglycoside antibiotics including neomycin, kanamycin, gentamicin, etc. is 2-deoxy-scyllo-inosose synthase (DOIS), which catalyzes the carbocycle formation from d-glucose-6-phosphate to 2-deoxy-scyllo-inosose (DOI). To clarify its precise reaction mechanism and crucial amino acid residues in the active site, we took advantage of a mechanism-based inhibitor carbaglucose-6-phosphate (pseudo-dl-glucose, C-6-P) with anticipation of its conversion to a reactive alpha,beta-unsaturated carbonyl intermediate. It turned out that C-6-P clearly showed time- and concentration-dependent inhibition against DOIS, and the molecular mass of the resulting modified-DOIS with C-6-P was 160 mass units larger than that of native DOIS. Thus, the expected alpha,beta-unsaturated intermediate appeared to trap a specific nucleophilic group in the active site through the Michael-type 1,4-addition. The covalently modified amino acid residue was determined to be Lys-141 by means of enzymatic digestion and subsequent LC/MS and LC/MS/MS of the digest. Also discussed are the role of Lys-141 in the substrate recognition and the reaction pathway and comparison with evolutionary related dehydroquinate synthase.     

7-endo selective aryl radical cyclization onto enamides leading to 3-benzazepines: concise construction of a cephalotaxine skeleton

Bu3SnH-mediated radical cyclizations of 2-(2-bromophenyl)-N-ethenylacetamide gave 6-exo cyclization product 15 as the major product, whereas N-[2-(2-bromophenyl)ethyl]-N-ethenylamides gave almost exclusively 7-endo cyclization products. These results indicated that the position of the carbonyl group on enamide played an important role in deciding the course of the cyclization. The 7-endo selective cyclization was applied to concise construction of a cephalotaxine skeleton.     

Molecular assembly of C2-symmetric Bis-(2S)-2-methyldodecanoylamides of alpha,omega-alkylidenediamines into coiled coil and twisted ribbon aggregates

A series of 10 didodecanoylamides of alpha,omega-alkylidenediamines bridged by a straight carbon chain varying in length from 0 to 9 carbons was examined as possible gelator molecules of organic liquids to gain information on the relationships between the spacial arrangement of two amide groups in a molecule and their effects on the microscopic structures of the gel. The structural characteristics of these amides are parallel and antiparallel arrangements of two amide carbonyl groups, which depend on the even and odd numbers of a bridging zigzag carbon chain. The linear alkyl chain moieties and a center carbon chain of diamides intermolecularly interact with each other within the van der Waals contact. Two amide moieties of an even number carbon chain diamide intermolecularly interact with each other by using two pairs of hydrogen bonds with two other molecules in a plane, which formed ribbonlike self-complementarily assembled aggregates. On the other hand, a diamide of an odd number carbon chain forms four independent hydrogen bonds with four other molecules not in a plane, which assembled into woven aggregates. Asymmetric introduction of a methyl group at the alpha-position of the amide groups successfully twists the two side chain van der Waals cores of the chiral diamides in the fixed direction, giving helically twisted ribbon and coiled coil aggregates. The helically twisted ribbon and coiled coil aggregates of these chiral diamides were directly observed by CD, SEM, and TEM, providing a basis for the design of a sophisticated small molecular gelator of a tailor-made shape.     

Alkali effects on the electronic states of K3C60 and Rb3C60

The electronic states in metallic alkali fullerides K₃C₆₀ and Rb₃C₆₀, are studied in detail by cw- and pulsed-ESR. The ESR linewidth associated with conduction electrons varies substantially, depending sensitively on the alkali metals used. It is clearly revealed that the linewidth is homogeneous and is strongly controlled by the spin-lattice relaxation times (T₁) determined via the spin-orbit interactions of the small fraction of s electrons remaining on the alkali atoms. The results indicate that the electron transfer from the alkali atoms to C₆₀ is not perfectly complete, with the remaining fraction being much greater in the tetrahedral sites than in the octahedral sites of the face-centered cubic lattice.     

Simultaneous determination of thiols and disulfides by high-performance liquid chromatography with fluorescence detection

The proposed simultaneous determination of thiols and disulfides requires 4- (aminosulfonyl)- 7-fluor-2,1,3,-benzoxadiazole (ABD-F) as the pre-column derivatization reagent for thiols and ammonium 7-fluoro-2,1,3,-benzoxadiazole-4-sulfonate (SBD-F) for disulfides followed by chromatography. The thiols and disulfides in solution are treated with ABD-F at 60°C for 5 min in pH 9.3 borate buffer containing 1 nM disodium-EDTA. After removal of excess of ABD-F with ethyl acetate, the remaining disulfides in the aqueous phase are treated with SBD-F at 60°C for 20 min in the presence of tri-n-butylphosphine, a reducing agent. The ABD-thiols and SBD-thiols thus produced are separated by reversed-phase chromatography and detected by fluorimetry (380- nm excitation, 510 - nm emission). SBD-cystein, SBD-homocystein, ABD-homocysteine, ABD-cysteine, SBD-glu- tathione, ABD-homocystein, SBD-N-acetylcystein, ABD-glutatione and ABD-N-acetylcysteine are well separated by linear gradient elution from 0.15 M H₃PO₄/CH₃CN (96:4) to 0.15 M H₃PO₄/CH₃CN (85:15) over 30 min followed by isocratic elution with 0.15 M H₃PO₄/CH₃CN (85:15) fro 10 min. The detection limits for the derivatives are in the range 0.09–0.9 pmol. When the method was applied to the determination of thiols and disulfides in rat tissues, cystein (0.75 μmol g^-1) and cystine (0.62 μmol g^-1) were obtained in kidney and reduced glutathione (1.4–3.4 μmol g^-1) was observed in liver, spleen, heart and testicle.     

Palladium nanoclusters deposited on single-walled carbon nanohorns

This study reports a direct route for deposition of Pd nanoclusters on single-walled carbon nanohorns (SWNHs) in a one step reaction involving chemical reduction of metal ions in the presence of a polymer-stabilizer. The applied strategy provides small Pd nanoclusters with an average diameter of approximately 2.3 nm robustly attached to the nanotubular carbon. The attachment is mediated by the polymer (poly(vinylpyrrolidone), PVP) used to stabilize the nanoclusters.     

Graft copolymerization of methyl methacrylate to poly(vinyl alcohol) initiated by ferric ion-hydrogen peroxide system

The reaction occurring on treatment of samples of poly(vinyl alcohol) previously oxidized by sodium hypochlorite with ferric ion and hydrogen peroxide was studied. The graft copolymerization taking place on adding methyl methacrylate to the above system was also studied. Early in the reaction there was a period during which hydrogen peroxide was greatly reduced by the poly(vinyl alcohol), and this corresponded with a rapid cleavage reaction of the main chain of the polymer. Moreover, it was found that the reaction was quantitatively proportional to the formation of carbonyl groups in the sample. On the other hand, very few grafts were scarcely formed during this period; they formed by a mild reaction which took place immediately after this period. It seems that this behavior is quite different from that observed with the ceric ion initiating system. It is presumed that the formation of grafts is due to radicals formed by the cleavage of the main chain, and that the structure of the copolymer so formed is something like a block polymer.     

Formation of β- and β″-Al2O3 by the solid state reaction between NaAlO2 and γ-Al2O3

The solid state reaction of NaAlO₂ with γ-Al₂O₃ was investigated kinetically. Powdered compacts with various compositions (Al₂O₃/NaAlO₂ = 1–5) were fired at 700–1200°C for 1–768 hr. The amounts of the reaction product were determined by peak heights of X-ray diffraction patterns. β″-Al₂O₃ was formed predominantly from the sample with Al₂O₃/NaAlO₂ = 2. The firing time for the β″-Al₂O₃ formation was shortened as the firing temperature was raised, and the activation energy, E_a, for formation was about 130–135 kcal/mole. The sample of Al₂O₃/NaAlO₂ = 5 formed m-Al₂O₃ with the mullite structure and was observed to transform gradually to β-Al₂O₃. E_a for the m-Al₂O₃ formation and for the transition were about 55–60 and 40 kcal/mole, respectively, which resulted in E_a of about 95–100 kcal/mole for the β-Al₂O₃ formation. The mechanism of the m-Al₂O₃ formation is discussed briefly.     

A catechol electrode based on spinach leaves

Minced spinach leaf (Spinacea oleracea) has a high activity of catechol oxidase (dimerizing) (EC 1.1.3.14), which is utilized for the determination of catechol by coupling the spinach tissue with a Clark oxygen electrode. The calibration graph for catechol is linear over the range 2×10^?5–8×10^?4 M (RSD 3%). The sensor retains its enzyme activity for at least 18 days. 4-Methylcatechol and glycolate interfere; glucose and ascorbate do not.     

Optical isolators using Bi-substituted rare-earth iron garnet films

Using Bi-substituted rare-earth iron garnet film, (GdBi)₃ (FeAlGa)₅O₁₂ or (YbTbBi)₃ Fe₅O₁₂, grown by liquid phase epitaxy technique, we have fabricated a compact, low cost and high performance optical isolator for near-infrared wavelength region, in comparison with conventional isolator using yttrium iron garnet (YIG) single crystal as Faraday rotator. Typical insertion loss and isolation of developed isolators are 0.6 dB and 35 dB respectively at =1.31 m and the size is 6×6 mm. The isolators, which could be used in the wavelength range of 1.31 to 1.55 m, are also fabricated with insertion loss of less than 1.1 dB and isolation of more than 35 dB.