Interference, fluctuation, and alternation of electron tunneling in protein media. 1. Two tunneling routes in photosynthetic reaction center alternate due to thermal fluctuation of protein conformation

Electron tunneling routes for the electron transfer from the bacteriopheophytin anion to the primary quinone in the bacterial photosynthetic reaction center of Rhodobactor sphaeroides are investigated by a combined method of molecular dynamics simulations for the protein conformation fluctuation and quantum chemical calculations for the electronic states of the donor, acceptor, and protein medium. The analysis of the tunneling route is made by mapping interatomic electron tunneling currents for each protein conformation. We found that there are two dominant routes mainly passing through Trp(M252) (Trp route) or mainly passing through Met(M218) (Met route). Actual electron tunneling pathways alternate between the two routes, depending on the protein conformation which varies with time. When either the Trp route or the Met route dominates, the electron tunneling matrix element /T(DA)/ becomes large. When both the Trp route and the Met route dominate, /T(DA)/ becomes very small due to the destructive interference of the electron tunneling currents between the two routes. We found that a linear relationship exists between the value of /T(DA)/ and the inverse of the degree of destructive interference Q for a wide range of values (ca. 3-10(3) for Q). A similar relationship was also found previously for electron transfer in ruthenium-modified azurins, suggesting that this relationship holds true in general. From these results, we are led to the conclusion that /T(DA)/ cannot exceed a maximum value at Q = 1, even if much variation of /T(DA)/ happens due to the fluctuation of protein conformation. We also conclude that the property of the electron transfer alternates between constructive and destructive interference, due to the fluctuation of protein conformation. It is impossible to keep a system in either constructive or destructive interference because thermal fluctuation of protein conformation takes place.     

Ladderlike ferromagnetic spin coupling network on a pi-conjugated pendant polyradical

A poly(9,10-anthryleneethynylene)-based polyradical with two pendant stable phenoxyls in one anthracene skeleton was newly synthesized via polymerization of the corresponding bromoethynylanthracene monomer using a Pd(0) catalyst. The average molecular weight of the polymer reached M(n) = 5 x 10(3) and was soluble in common organic solvents. The polyradical was prepared from the corresponding hydroxyl precursor polymer and was appropriately stable at room temperature. The ESR spectrum of the corresponding monomeric radical suggested an effectively delocalized spin density distribution on the backbone anthracene. The magnetization and the static magnetic susceptibility of the polyradical were measured using a SQUID magnetometer. The large average spin quantum number (S = (5)/(2)) of the polyradical indicated that the ferromagnetic spin coupling network of the polyradical had spread throughout the pi-conjugated chain and that it was considerably insensitive to spin defects.     

Tropone Is a Mere Ketone for Cycloadditions to Ketenes

Tropone ( 1 ) reacts with ketenes 2 to yield [8+2] cycloadducts, the γ‐lactones 3 . The concerted [8+2] cycloaddition path is formally symmetry‐allowed, but we established that it is unfavorable. Careful low‐temperature NMR (¹H, ¹³C, and ¹⁹F) spectroscopies of the reaction of diphenyl ketene ( 2b ) or bis(trifluoromethyl) ketene ( 2c ) with tropone ( 1 ) allowed the direct detection of a β‐lactone intermediates 5b , c and novel norcaradiene species 6b , c in head‐to‐head configurations. The [2+2] cycloadducts 5b , c equilibrated with the norcaradienes 6b , c . The β‐lactones 5b and 5c were converted to the γ‐lactones 3b and 3c , respectively, in quantitative yields. The DFT calculations showed that the concerted [8+2] cycloaddition is unfavorable. The first step of the calculated reaction 1 + 2c is a cycloaddition which leads to a dioxetane intermediate. This initial [2+2] cycloadduct is isomerized to the β‐lactone 5c via the first zwitterionic intermediate. The β‐lactone 5c is further isomerized to the product γ‐lactone 3c via the second zwitterion intermediate. Thus, 3c is not formed via the well‐established two‐step mechanism including zwitterionic intermediates but via a five‐step mechanism composed of a [2+2] cycloaddition and subsequent isomerization (Scheme 12).     

Magnetic Circular Dichroism and Electronic Spectra of Tropothione

The magnetic circular dichroism (MCD) and electronic absorption spectra of tropothione have been measured. The circular-dichroism (CD) spectrum of the β-cyclodextrin complex with tropothione is also reported. The absorption bands of tropothione are assigned.     

Tributylstannylated silicic acid as precursor of organofunctionalized silica gel

Tributylstannylated silicic acid (TBSA), which was regarded as a protected polymeric silanol against self-condensation to give silica gel, was newly prepared from the reaction of water glass (WG) and bis(tributyltin) oxide (TBO). The ratios of Si/Sn contained in TBSA were determined by gravimetric analysis to be in the range of 2–3. The gelation of TBSA in usual organic solvents such as hexane, benzene, and dichloromethane was not observed over 3 weeks. In addition, TBSA was shown to be a convenient precursor for the preparations of silica gel modified with organofunctional groups. From the reaction of TBSA with trimethoxysilanes and aromatic alcohols, the silica gels havingorganofunctional groups were obtained with the elimination of a tributyltin group. © 1998 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 36: 655–663, 1998     

Electrical conductivity of π-conjugated polymers with nitro substituents

π-Conjugated polymers bearing nitro substituent(s), e.g., poly(aryleneethynylene) (PAE) type polymers and poly(4,8-dinitroanthraquinone-1,5-diyl) P(4,8-NO₂-1,5-AQ), show semiconducting properties with electrical conductivities of an order of 10⁻⁷ to 10⁻⁶ S · cm⁻¹ at room temperature without special oxidation and reduction of the polymer. P(4,8-NO₂-1,5-AQ) shows a large shift of phase in alternating current (ac) measurements and a unique magnetism at low temperature.     

Chemical role of amines in the colloidal synthesis of CdSe quantum dots and their luminescence properties

The role of organic amines in the colloidal synthesis of CdSe quantum dots (QDs) has been studied. CdSe QDs were synthesized from the source solutions containing 5 vol% of amines having various alkyl chain lengths, stereochemical sizes and electron donation abilities. The role of the additional amines was evaluated on the basis of the photoluminescence (PL) properties such as PL wavelength and intensity of the obtained CdSe QDs. The observed PL spectra were explained by the fact that the amines behaved as capping ligands on the surface of the QDs in the product colloidal solution and complex ligands for cadmium in the source solutions. It was shown that the particle size was controlled by the diffusion process depending on the mass and stereochemical shape of the amines, and the luminescence intensity increased with the increasing electron donation ability and capping density of the amines.     

Out of plane measurements of the decay neutron from the giant resonance in the 12C(e,e(')n)11C reaction

Out of plane measurements of the angular correlations for the 12C(e, e(')n) reaction have been performed for the first time in the giant resonance region. The cross sections were directly separated into the longitudinal and transverse, longitudinal-transverse, and transverse-transverse components. The cross section at the peak of the giant resonance ( omega = 22.5 MeV) has been found to be almost all longitudinal. It was reproduced by the multipole expansion with E0 and E2 components besides E1. The longitudinal-transverse component might have a maximum around 24 MeV. The transverse-transverse component is very small over the giant resonance.     

A polysaccharide carrier for immunostimulatory CpG DNAs to enhance cytokine secretion

A beta-(1 --> 3)-d-glucan schizophyllan (SPG) forms a stoichiometric complex with some polynucleotides. This communication describes our attempt to apply the SPG complex to deliver CpG DNA to endosomes to enhance cytokine secretion. To increase cellular uptake, we introduced spermine, arginine-glycine-aspartic acid tripeptide, octaarginine, or cholesterol to the SPG side chain. The chemically modified SPG showed essentially no cytotoxicity. When CpG DNA complex made therefrom was exposed to macrophages, dramatic enhancement in the cytokine secretion was observed. It increased 5-10 times from the naked dose and 100 times from the background. This performance promises that SPG can be an excellent carrier for CpG DNA.