Nuclear and atomic activation with heavy ion beams

Heavy ion activation has been studied as a method for determining hydrogen. The reactions used [e.g.¹H(⁷Li, n)⁷Be] are the “inverse” of well known reactions [e.g.⁷Li(p, n)⁷Be]. Nuclear activation parameters for the ion beams of interest (⁷Li²⁺,¹⁰B²⁺) have been studied. The analytical feasibility is demonstrated with the determination of hydrogen in titanium at the 100 and 30 ppm levels with relative precisions of 8 to 10%. Detection limits in titanium are in the 0.1 to 0.5 ppm range. Heavy ion bombardment is also accompanied by the emission of characteristic X-rays (“atomic” activation). The parameters governing X-ray emission and background production have been investigated. Experimental K and L X-ray yields from thick targets have been measured for many elements excited by Oⁿ⁺ beams of 0.5 to 7 MeV/amu and Kr⁷⁺ beams of 0.5 to 1 MeV/amu. The simultaneous determination of trace elements at levels of 10 to several 100 ppm in microsamples (∼10⁻⁵ g) is demonstrated on biological specimens. K and L X-ray yields and corresponding detection limits have also been measured with the⁷Li²⁺ and¹⁰B²⁺ beams used for the nuclear activation of hydrogen. With these beams (∼6 MeV/amu) simultaneous nuclear and atomic activation is possible, yielding an unusual multielement trace analysis capability covering hydrogen and medium and high Z elements.     

Megawatt, 330 Hz PRF tunable gyrotron experiments

Repetitively pulsed and cw gyrotrons have hitherto used thermionic cathodes, whereas cold cathode gyrotrons have normally operated as single shot devices. The novel results presented here show that cold cathode gyrotrons can be successfully pulsed repetitively. A tunable gyrotron with a pulse repetition frequency (PRF) of 150Hz is demonstrated. This system developed >4MW mm-wave output pulses at 100GHz. The gyrotron is based on a two-electrode configuration comprising a field-immersed, field emission, cold cathode and a shaped anode cavity. A superconducting magnet was used to produce the homogeneous intra-cavity magnetic field and a cable pulser was used to drive the electron beam. This pulser produced up to a (200±20)kV pulse with 10ns rise time, a 100ns flat top, a 10ns decay with a characteristic impedance of 200. The energy storage capacity of the cable pulser was 35J. The charging unit limited the maximum PRF to 330Hz. Due to spark gap switching limitations 330Hz was only obtainable in 5 to 10 pulse bursts. For substantial periods of the order of 30 seconds, 100Hz PRF was achieved over an oscillating range of 28 to 100GHz and 150Hz PRF was achieved at 80GHz. No degradation effects on the mm-wave output pulse was evident due to diode recovery time throughout this series of results. A subsequent conclusion is that the diode recovery time in our cold cathode gyrotron is less than 3ms.     

Separation of Dihydrofolate Reductase Inhibitors by RP-HPLC and Comparison with Capillary Zone Electrophoresis

The dihydrofolate reductase inhibitors (DHFRIs) are a group of antibiotic compounds with closely related chemical structures. A previous attempt to separate the eight compounds by CZE was successful, but only at low pH (2.1) and high buffer concentration (250mM phosphate). As a result, baseline noise was high. Additionally, baseline resolution was not quite achieved and the separation took 25 minutes. However, the size-based separation indicated that reversed-phase HPLC might be a good alternative. A three-dimensional overlapping resolution mapping (OR_sM) scheme utilised pH, flow rate and percentage organic modifier (for both methanol and acetonitrile). Clear generalised outcomes were observed under isocratic conditions. At higher pHs, where the analytes were largely unionised, retention was excessive. At higher percentages of MeOH or ACN, the more-difficult-to-separate components were poorly resolved. On the other hand, low pHs (2.5 in 50mM phosphate) with low percentages of the organic modifiers (7% ACN or 11% MeOH) but high flow rates (2.3mLmin^–1) yielded better than baseline resolution in 17 minutes. A partially optimised gradient run (at pH 6.5) again yielded far better than baseline resolution in 12 minutes, but required 4 minutes re-equilibration. Hence, the HPLC separations are superior to the CZE separation in all of runtime (40%), resolution and limit of detection (down by 6).     

Salt effects in capillary zone electrophoresis. V. Adsorption and retention of electrically neutral analytes

Two electrically neutral analytes previously observed to be separated from the neutral marker in capillary zone electrophoresis (CZE) experiments [sulphanilamide (SAA) and sulphaguanidine (SGW)] have been examined to determine the basis for separation. The degree of separation increases markedly with buffer concentration and improves with increasing field strength. On the basis of the apparent electrophoretic mobilities in conventional CZE, migration times in a zero EOF environment were calculated for SAA, SGW and six other sulphonamides that were known to be ionized. These six markers were used to test the legitimacy of our predictions and to correct for small discrepancies between the predicted and observed migration times. It was concluded that SAA and SGW have negligible electrophoretic mobilities and that they are retained in the electrical double layer close to the capillary wall. A mechanism for adsorption is proposed and the generality of the phenomenon is discussed.     

Computational investigation of irreversible inactivation of the zinc-dependent protease carboxypeptidase A

Zinc proteases are ubiquitous and the zinc ion plays a central function in the catalytic mechanism of these enzymes. A novel class of mechanism-based inhibitors takes advantage of the zinc ion chemistry in carboxypeptidase A (CPA) to promote covalent attachment of an inhibitor to the carboxylate of Glu-270, resulting in irreversible inhibition of the enzyme. The effect of the active site zinc ion on irreversible inactivation of CPA was probed by molecular orbital (MO) calculations on a series of active site models and the Cl(-) + CH(3)Cl S(N)2 reaction fragment. Point charge models representing the active site reproduced energetics from full MO calculations at 12.0 A separation between the zinc and the central carbon of the S(N)2 reaction, but at 5.0 A polarization played an important role in moderating barrier suppression. ONIOM MO/MO calculations that included the residues within 10 A of the active site zinc suggest that about 75% of the barrier suppression arises from the zinc ion and its ligands. A model of the pre-reactive complex of the 2-benzyl-3-iodopropanoate inactivator with CPA was constructed from the X-ray structure of l-phenyl lactate bound in the active site of the enzyme. The model was fully solvated and minimized by using the AMBER force field to generate the starting structure for the ONIOM QM/MM calculations. Optimization of this structure led to the barrierless S(N)2 displacement of the iodide of the inhibitor by Glu-270, assisted by interaction of the zinc ion with the leaving group. The resulting product is in good agreement with the X-ray structure of the covalently modified enzyme obtained by irreversible inhibition of CPA by 2-benzyl-3-iodopropanoate.     

Selective small molecule inhibitors of glycogen synthase kinase-3 modulate glycogen metabolism and gene transcription

BACKGROUND: Glycogen synthase kinase-3 (GSK-3) is a serine/threonine protein kinase, the activity of which is inhibited by a variety of extracellular stimuli including insulin, growth factors, cell specification factors and cell adhesion. Consequently, inhibition of GSK-3 activity has been proposed to play a role in the regulation of numerous signalling pathways that elicit pleiotropic cellular responses. This report describes the identification and characterisation of potent and selective small molecule inhibitors of GSK-3. RESULTS: SB-216763 and SB-415286 are structurally distinct maleimides that inhibit GSK-3alpha in vitro, with K(i)s of 9 nM and 31 nM respectively, in an ATP competitive manner. These compounds inhibited GSK-3beta with similar potency. However, neither compound significantly inhibited any member of a panel of 24 other protein kinases. Furthermore, treatment of cells with either compound stimulated responses characteristic of extracellular stimuli that are known to inhibit GSK-3 activity. Thus, SB-216763 and SB-415286 stimulated glycogen synthesis in human liver cells and induced expression of a beta-catenin-LEF/TCF regulated reporter gene in HEK293 cells. In both cases, compound treatment was demonstrated to inhibit cellular GSK-3 activity as assessed by activation of glycogen synthase, which is a direct target of this kinase. CONCLUSIONS: SB-216763 and SB-415286 are novel, potent and selective cell permeable inhibitors of GSK-3. Therefore, these compounds represent valuable pharmacological tools with which the role of GSK-3 in cellular signalling can be further elucidated. Furthermore, development of similar compounds may be of use therapeutically in disease states associated with elevated GSK-3 activity such as non-insulin dependent diabetes mellitus and neurodegenerative disease.     

The coordination chemistry of perfluorovinyl substituted phosphine ligands, a crystallographic and spectroscopic study. Co-crystallisation of both cis- and trans-isomers of [PtCl2{P(i)pr2(CF=CF2)}2] within the same unit cell

The coordination chemistry of the perfluorovinyl phosphines PEt2(CF=CF2), P(i)Pr2(CF=CF2), PCy,(CF=CF2) and PPh(CF=CF2)2 to rhodium(I), palladium(II), and platinum(II) centres has been investigated. The electronic properties of the ligands are estimated based on v(CO) and 1J(Rh-P) values. X-Ray diffraction data for the square-planar Pd(II) and Pt(II) perfluorovinyl-phosphine containing complexes allow estimates of the steric demand for the series of ligands PPh2(CF=CF2), PEt2(CF=CF2), P(i)Pr2(CF=CF2), PCy2(CF=CF2) and PPh(CF=CF2)2 to be determined. The (CF=CF2) fragment is found to be more electron withdrawing than (C6F5) yet sterically less demanding. These ligands therefore provide a range of electron-neutral to phosphite-like electronic properties combined with a range of steric demands. This study also reveals that short intramolecular interactions from the metal centre to the beta-fluorine atom cis to phosphorus of the CF=CF2 groups are observed in all-trans square planar complexes of the ligands. Unusually, the complex [PtCl2{P(i)Pr2(CF=CF2)}2] crystallises with both cis- and trans-isomers present in the unit cell. It appears that co-crystallisation of both isomers occurs in order to maximise fluorous regions in the crystal packing, and the extended structure displays short fluorine-fluorine contacts. The generation of mixed geometries seems to be a phenomenon of crystallisation, as solution phase NMR studies reveal the presence of only the trans-isomer.     

Endonucleolytic mutation analysis by internal labeling (EMAIL)

Mismatch-specific endonucleases are efficient tools for the targeted scanning of populations for subtle DNA variations. Conventional protocols involve 5'-labeled amplicon substrates and the detection of digestion products by LIF electrophoresis. A shortcoming of such protocols, however, is the limited 5'-signal strength. Normally the sensitivity of fluorescent DNA analyzers is superior to that of intercalating dye/agarose systems, however, pooling capacities of the former and latter approaches to mismatch scanning are somewhat similar. Detection is further limited by significant background. We investigated the activity of CEL nucleases using amplicon substrates labeled both internally and at each 5'-terminus. The amplicons were generated from exon 8 of the rice starch synthase IIa encoding gene. Signal of both 5'-labels was significantly reduced by enzyme activity, while that of the internal label was largely unaffected. In addition, background resulting from internal labeling was a significant improvement on that associated with 5'-labeling. Sizing of the multilabeled substrates suggests that 5'-modification enhances exonucleolytic activity, resulting in the removal of the dye-labeled terminal nucleotides. We have developed an alternative approach to mismatch detection, in which amplicon labeling is achieved via the incorporation of fluorescently labeled deoxynucleotides, which we have named Endonucleolytic Mutation Analysis by Internal Labeling (EMAIL). The strength of the EMAIL assay was demonstrated by the reclassification of a rice line as being heterozygous for the starch gene. This cultivar was assigned as being homozygous by a previous resequencing study. EMAIL shows potential for the clear identification of multiple mutations amongst allelic pools.