Synthesis of hydroxy and methoxy perylene quinones, their spectroscopic and computational characterization, and their antiviral activity

Hydroxy and methoxy perylene quinones are synthesized in an attempt to isolate the essential spectroscopic and biological features of light-induced antiviral agents such as hypericin and hypocrellin. Unlike their naturally occurring counterparts, these synthetic quinones bear the carbonyl, hydroxyl, and methoxy groups in the "bay region." The hydroxy and methoxy compounds have rich absorption spectra with broad features in the visible (approximately 450-800 nm) and relatively more intense and narrow features at wavelengths < or = 350 nm. High-level ab initio quantum mechanical calculations assign the features in the absorption spectra to electronic transitions from S0 to S2 and to higher-lying electronic states. The calculations indicate that in the ground state the trans dihydroxy isomer is 12.5 kcal/mol lower in energy than the cis dihydroxy isomer and is thus the only species present. The lowest-energy trans methoxy ground state isomer and the lowest-energy cis methoxy ground state isomer are found to be degenerate. An additional cis methoxy isomer 6.3 kcal/mol higher in energy than the global minimum is assumed to contribute to the spectrum and is also considered. Finally, the synthetic compounds exhibit similar light-induced antiviral activity to each other, but significantly less than that of hypericin.     

Degradation of Na amylose xanthate in dilute caustic soda solution during ripening

Na amylose xanthate was prepared from potato starch by xanthation of amylose in dilute NaOH solution. Pure xanthate was then isolated and viscometric and turbidimetric studies on its ripening characteristics were carried out for a period of about 200 hrs. Prolonged ripening in air degraded the amylose chain without formation of gel. To study the nature of ripening more precisely, it was carried out in an identical way under N₂ and followed both viscometrically and turbidimetrically. The refractive-index increment (dn/dc) of the xanthate solutions during ripening under both air and nitrogen was continuously measured so as to avoid any possible error in computing correct molecular weights during ripening. Light-scattering molecular weights (M?_w) thus computed during the course of degradation of Na amylose xanthate extending for about 200 hr under both air and nitrogen were found to obey a first-order rate equation, In (M₀/M_t) = Kt where M_o is the initial molecular weight, M_t the molecular weight at time t of ripening, and K the rate constant of the degradation process.     

A microarray enzyme-linked immunosorbent assay for autoimmune diagnostics

In order to quantify autoantibodies in the sera of patients with autoimmune disease, we have created a microarray-based immunoassay that allows the simultaneous analysis of 18 known autoantigens. The microarrays contain serial dilutions of the various antigens, thereby allowing accurate determination of autoantibody titer using minimal amounts of serum. The assay is very sensitive and highly specific: as little as 40 fg of a known protein standard can be detected with little or no cross-reactivity to nonspecific proteins. The signal intensities observed from serial dilutions of immobilized antigen correlate well with serial dilutions of autoimmune sera. Miniaturized and highly parallelized immunoassays like these will reduce costs by decreasing reagent consumption and improve efficiency by greatly increasing the number of assays that can be performed with a single serum sample. This system will significantly facilitate and accelerate the diagnostics of autoimmune diseases and can be adapted easily to any other kind of immunoassay.     

Fragmentation of the enolate ion of 2,3-butanedione. Characterization of the acetyl anion by charge inversion mass spectrometry

The unimolecular and collision-induced fragmentation reactions of the enolate ion of 2,3-butanedione, [CH₃COCOCH₂]^?, have been studied, Unimolecular fragmentation on the metastable ion time-scale forms [HCCO]^?, [C₂H₃O]^?, [C₃H₅O]^? and [CH₃CO₂]^?. Charge inversion mass spectrometry shows that the [C₂H₃O]^? ion is the acetyl anion while the [C₃H₅O]^? product is the acetone enolate ion; formation of the latter product involves a large release of kinetic energy (T _1/2 = 0.99 eV). The fragmentation reactions occurring following collisional activation have been determined for 8 keV collisions and over the range 1.5–30 eV center-of-mass collision energy. Formation of [HCCO]^? and [CH₃CO]^? are of the most important reactions following collisional activation and it is concluded that the two reactions have similar critical reaction energies even though formation of [HCCO]^? is favored thermochemically.     

Factors influencing the transport of short-chain alcohols through mesoporous gamma-alumina membranes

The pressure-driven transport of water, ethanol, and 1-propanol through supported gamma-alumina membranes with different pore diameters is reported. Water and alcohols had similar permeabilities when they were transported through gamma-alumina membranes with average pore diameters of 4.4 and 6.0 nm, and the permeability coefficient was found to be proportional to the square of pore size, in accordance with a viscous flow mechanism. For transport through membranes with an average diameter of 3.2 nm, the behavior of water was in accordance with the viscous flow mechanism, but the permeability of the membrane for ethanol and 1-propanol was much smaller than expected and could not be explained in terms of viscous flow. Although the low permeability of the membrane with 3.2 nm pores for ethanol and 1-propanol was partly due to the presence of small amounts of water in the alcohols, the permeability coefficients were still substantially smaller when water was absent. This intrinsic difference between water and alcohol may be due to differences in molecular size, chemisorption of alcohols on the oxide pore wall, which would lead to a reduction of the effective pore size, and/or a certain degree of translational ordering of the alcohol molecules inside the membrane pores, which leads to an effectively higher viscosity and, therefore, to a higher transport resistance.     

Fabrication of submicron scale patterned plastic thin film fluidic devices with controllable thickness

We present a soft-lithography based method to fabricate plastic thin film fluidic devices on glass and plastic substrates. Principles of soft-lithography and spin casting were used to generate the films. The thickness of these films is controllable and the patterns we have generated have submicron scale dimensions. By using commercially available compact disc (CD) components as molds, we have been able to generate parallel line and cross patterns on these thin films. These patterned films could be lifted from the substrates and further folded into rolls.     

Self-organized perylene diimide nanofibers

A propeller-shaped perylene diimide trimer was synthesized and a simple evaporation method was used for the self-organization of trimer molecules into fluorescent nanofibers. The sizes of these fibers-from 4 to 150 nm in diameter-were measured by atomic force microscopy and can be controlled by adjusting the concentration of the initial solution. The aspect ratios (length/height) are around 500. The plane of the trimer was determined by polarized scanning confocal microscopy to be perpendicular to the axis of the fibers, in agreement with molecular mechanics calculations. UV/vis and NMR spectroscopies were used to monitor concentration-dependent pi-pi stacking in solution. Single-fiber fluorescence imaging and spectroscopy were performed using a total internal reflection fluorescence microscope equipped with a digital color camera and imaging CCD spectrometer. Strongly red-shifted fluorescence from these fibers indicates a high degree of electronic delocalization, and breaking up this delocalization by photobleaching blue-shifts the emission toward that of an isolated noninteracting molecule. The delocalization along these nanofibers and the ability to study the electronic structure using fluorescence make them potentially useful in nanoscale devices, such as field effect transistors and photoconductors.     

Identification of a vibrational frequency corresponding to H-atom translocation in hypericin

Using time-resolved infrared spectroscopy, ab initio quantum mechanical calculations and synthetic organic chemistry a region in the infrared spectrum of triplet hypericin has been found between 1400 and 1500 cm-1 corresponding to the translocation of the hydrogen atom between the enol and the keto oxygens, O...H...O. This result is discussed in the context of the photophysics of hypericin and of eventual measurements to observe directly the excited-state H-atom transfer.     

Iodine-catalyzed efficient conjugate addition of pyrroles to α,β-unsaturated ketones

Iodine was used as a catalyst for the conjugate addition of pyrroles to α,β-unsaturated ketones at room temperature. Mono- and dialkylated products were obtained by using equimolar amounts of the reactants. However, the use of excess enones afforded only dialkylated products.     

Biophysical and biochemical investigation on the binding of a manganese–cyanonitrosyl complex with DNA

The interaction of a cyanonitrosyl–manganate complex with DNA has been studied by u.v.–vis spectroscopy, circular dichroism, fluorescence and gel electrophoresis techniques. As the DNA 260 nm band remained insensitive to interaction, the interaction ratio was determined by monitoring the CN⁻→ Mn LMCT band observed at 222 nm, and the interaction ratio was found to be in the complex (D): DNA (P)=1:0.30 from the spectrophotometric titration. The above-mentioned physical measurements indicate that the binding mode is not intercalative and the cyanonitrosyl system is a groove binder.