A Simple Fabrication Method for Three‐Dimensional Gold Nanoparticle Electrodes and Their Application to the Study of the Direct Electrochemistry of Cytochrome c

A simple method for constructing gold nanoparticle‐modified electrodes with three‐dimensional nanostructures is demonstrated. The electrodes were prepared by casting citrate‐reduced AuNPs onto polycrystalline gold electrodes. The resultant electrodes had a large surface area‐to‐volume ratio, adequate for high protein loading and conferring high stability. The gold nanoparticle electrodes were covered with a self‐assembled monolayer of 11‐mercaptoundecanoic acid for electrostatic immobilization of cytochrome c (cyt c). At the electrode, direct, reversible electron transfer from cyt c was observed with remarkable stability. Moreover, an extremely high surface coverage of electrochemically active cyt c, 167 fully packed monolayers, was obtained through use of the electrode.     

Bound fluxon pair in one-dimensional SQUID array

We propose a one-dimensional array of superconducting quantum interference devices (SQUIDs) composed of three asymmetrically positioned Josephson junctions to realize a discrete double sine-Gordon (DSG) model. Two fluxons in this SQUID array attract each other and form bound states with internal oscillation modes. We conduct numerical simulations of a discrete DSG equation, and show that the period of the internal oscillation of a moving fluxon pair exhibits relativistic time dilation except near the speed of light. We also show that driving with a pure alternating current causes progressive motion of the bound fluxon pair even in the presence of dissipation.     

Automatic coarse-alignment for TEM tilt series of rod-shaped specimens collected with a full angular range

An automatic coarse-alignment method for a tilt series of rod-shaped specimen collected with a full angular range (from α = ?90° to +90°, α is the tilt angle of the specimen) is presented; this method is based on a cross-correlation method and uses the outline of the specimen shape. Both the rotational angle of the tilt axis and translational value of each image can be detected in the images without the use of markers. This method is performed on the basis of the assumption that the images taken at α = ?90° and α =  + 90° are symmetric about the tilt axis. In this study, a carbon rod on which gold particles have been deposited is used as a test specimen for the demonstration. This method can be used as an automatic coarse-alignment method prior to the application of a highly accurate alignment method because the alignment procedure can be performed automatically except for the initial setup of some parameters.     

Electrochemical extraction of proteins by reverse micelle formation

The transfer of proteins by the anionic surfactant bis(2-ethylhexyl) sulfosuccinate (AOT) at a polarized 1,2-dichloroethane/water (DCE/W) interface was investigated by means of ion-transfer voltammetry. When the tetrapentylammonium salt of AOT was added to the DCE phase, the facilitated transfer of certain proteins, including cytochrome c (Cyt c), ribonuclease A, and protamine, could be controlled electrochemically, and a well-defined anodic wave for the transfer was obtained. At low pH values (e.g., pH 3.4), the anodic wave was usually well-separated from the wave for the formation of protein-free (i.e., unfilled) reverse micelles. The anodic wave for the protein transfer was analyzed by applying the theory for facilitated transfer of ions by charged ligands and then supplying information regarding the number of AOT anions reacting with one protein molecule and the total charge carried by the protein transfer. However, controlled-potential electrolyses performed for the transfer of Cyt c, which is red, revealed that the protein-AOT complexes were unstable in DCE and liable to aggregate at the interface when the pH of the W phase was 3.4. At pH 7.0, when formation of unfilled reverse micelles occurred simultaneously, the protein-AOT complexes appeared to be stabilized, probably via fusion with unfilled reverse micelles.     

Kinetic appearance of first-order gas-liquid expanded and liquid expanded-liquid condensed phase transitions below the triple point

Phase diagram of Gibbs monolayers of mixtures containing n-hexadecyl phosphate (n-HDP) and L-arginine (L-arg) at a molar ratio of 1:2 has been constructed by measuring surface-pressure-time (pi-t) isotherms with film balance and by observing monolayer morphology with Brewster angle microscopy (BAM). This phase diagram shows a triple point for gas (G), liquid expanded (LE), and liquid condensed (LC) phases at around 6.7 degrees C. Above this triple point, a first-order G-LE phase transition occurring at 0 surface pressure is followed by another first-order LE-LC phase transition taking place at a certain higher surface pressure that depends upon temperature. The BAM observation supports these results. Below the triple point, the pi-t measurements show only one first-order phase transition that should be G-LC. All of these findings are in agreement with the general phase diagram of the spread monolayers. However, the BAM observation at a temperature below the triple point shows that the thermodynamically allowed G-LC phase transition is, in fact, a combination of the G-LE and LE-LC phase transitions. The latter two-phase transitions are separated by time and not by the surface pressure, indicating that the G-LC phase transition is kinetically separated into these two-phase transitions. The position of the LE phase below the triple point in the phase diagram is along the phase boundary between the G and LC phases.     

Synthesis and reaction of alpha-dithiolactone

Treatment of di-tert-butylthioketene S-oxide (5 a) with Lawesson reagent at room temperature resulted in the formation of 3,3-di-tert-butylthiirane-2-thione (4 a) in high yield. The oxidation of 4 a with mCPBA (mCPBA=m-chloroperbenzioc acid) gave 3,3-di-tert-butylthiirane-2-thione S-oxide (6) almost quantitatively. The reactions of 4 a with dimethyl acetylenedicarboxylate (DMAD) and benzyne afforded dimethyl 2-(2,2,4,4-tetramethylpentan-3-ylidene)-1,3-dithiole-4,5-dicarboxylate (13) and 2-(2,2,4,4-tetramethylpentan-3-ylidene)benzo[d][1,3]dithiole (15), respectively, in high yields, suggesting that 4 a is an excellent 1,3-dipole. The reaction of 4 a with ethylenebis(triphenylphosphine)platinum (16) gave dithiolato-platinum complex (22) in high yield. The structure of 22 was determined by X-ray crystallographic analysis.     

Liquid structure and preferential solvation of metal ions in solvent mixtures of N,N-dimethylformamide and N-methylformamide

Raman spectra of aprotic N,N-dimethylformamide (DMF) and protic N-methylformamide (NMF) mixtures containing manganese(II), nickel(II), and zinc(II) perchlorate were obtained, and the individual solvation numbers around the metal ions were determined over the whole range of solvent compositions. Variation profiles of the individual solvation numbers with solvent composition showed no significant difference among the metal systems examined. In all of these metal systems, no preferential solvation occurs in mixtures with DMF mole fraction of x(DMF) < 0.5, whereas DMF preferentially solvates the metal ions at x(DMF) > 0.5. The liquid structure of the mixtures was also studied by means of small-angle neutron scattering (SANS) and low-frequency Raman spectroscopy. SANS experiments demonstrate that DMF molecules do not appreciably self-aggregate in the mixtures over the whole range of solvent composition. Low-frequency Raman spectroscopy suggests that DMF molecules are extensively hydrogen-bonded with NMF in NMF-rich mixtures, whereas NMF molecules extensively self-aggregate in DMF-rich mixtures, although the liquid structure in neat NMF is partly ruptured. The bulk solvent structure in the mixtures thus varies with solvent composition, which plays a decisive role in developing the varying profiles of the individual solvation numbers of metal ions in the solvent mixtures.     

Quantum dynamics study on the product branching for the C(3P) + C2H2 reaction: cyclic-C3H versus linear-C3H

Reduced-dimensionality quantum reactive scattering calculations for the C(3P) + C2H2 reaction have been carried out in order to understand the product branching dynamics of cyclic-C3H + H and linear-C3H + H. Our model treats only two degrees of freedom but can explicitly describe both of the C3H isomer product channels. The lowest triplet potential energy surface has been obtained by the hybrid density-functional method at the B3LYP/6-31G(d,p) level of theory. The calculated reaction probabilities were found to be dominated by resonance consistent with the complex-formation potential, and the results show that cyclic-C3H is preferentially formed via the cyclic-C3H2 intermediate produced by insertion of C(3P) into the CC bond. We have found that the isomerization from the cyclic-C3H2 to linear-C3H2 intermediate is suppressed by a barrier separating potential wells corresponding to these two intermediates. It has also been found that the energy dependence of the calculated total reaction cross section is in good agreement with the result of crossed molecular beam experiments.     

Application of the total evaporation technique to chromium isotope ratio measurement by thermal ionization mass spectrometry

The total evaporation technique of thermal ionization mass spectrometry was applied to the isotopic analysis of chromium. High measurement reproducibility of the chromium isotope ratios was verified (2 S.E. < 0.05% (⁵³Cr/⁵²Cr)), while a clear mass fractionation effect was observed by using conventional measurement technique. The chromium isotope ratios analyzed by the total evaporation method were not affected by the sample amount on the rhenium filament (50-500 ng Cr). The isotopic analysis under the coexistence of zinc was also performed, and its effect to the chromium isotope ratios was confirmed.