Geometry optimization based on linear response free energy with quantum mechanical/molecular mechanical method: applications to Menshutkin-type and Claisen rearrangement reactions in aqueous solution

The authors present a method based on a linear response theory that allows one to optimize the geometries of quantum mechanical/molecular mechanical (QM/MM) systems on the free energy surfaces. Two different forms of linear response free energy functionals are introduced, and electronic wave functions of the QM region, as well as the responses of electrostatic and Lennard-Jones potentials between QM and MM regions, are self-consistently determined. The covariant matrix relating the QM charge distribution to the MM response is evaluated by molecular dynamics (MD) simulation of the MM system. The free energy gradients with respect to the QM atomic coordinates are also calculated using the MD trajectory results. They apply the present method to calculate the free energy profiles of Menshutkin-type reaction of NH3 with CH3Cl and Claisen rearrangement of allyl vinyl ether in aqueous solution. For the Menshutkin reaction, the free energy profile calculated with the modified linear response free energy functional is in good agreement with that by the free energy perturbation calculations. They examine the nonequilibrium solvation effect on the transmission coefficient and the kinetic isotope effect for the Claisen rearrangement.     

Organocatalyst-mediated enantioselective intramolecular aldol reaction featuring the rare combination of aldehyde as nucleophile and ketone as electrophile

The trifluoroacetic acid salt of 2-(pyrrolidinylmethyl)pyrrolidine was found to be an effective organocatalyst of an asymmetric intramolecular aldol reaction, affording bicyclo[4.3.0]nonane derivatives with a high enantioselectivity, in which the rare combination of aldehyde as a nucleophile and ketone as an electrophile was realized.     

The distinction of underivatized monosaccharides using electrospray ionization ion trap mass spectrometry

A convenient method for distinguishing underivatized isomeric monosaccharides has been established using electrospray ionization ion trap mass spectrometry (ESI-ITMS). Mass spectra of hexoses (glucose, galactose, and mannose), N-acetylhexosamines (N-acetylglucosamine, N-acetylgalactosamine, and N-acetylmannosamine) and hexosamines (glucosamine, galactosamine, and mannosamine) dissolved in solvent containing 1 mM ammonium acetate were obtained in the positive ion mode. Glucose was distinguished from galactose and mannose in the MS(2) spectrum of the [M+NH(4)](+) ion at m/z 198. The MS(3) spectra generated from [M+NH(4)-H(2)O-NH(3)](+) at m/z 163 showed that galactose and mannose could be distinguished by the ratio of peak intensities at m/z 145 and 127, while the three N-acetylhexosamine and hexosamine stereochemical isomers could be identified by the relative abundance ratios of product ions observed in MS(3) spectra. The investigation of MS and MS(2) spectra from complexes of these monosaccharides with Na(+) and Pb(2+) failed to distinguish these monosaccharide isomers. Therefore, multiple stage mass analysis by ESI-ITMS using either [M+NH(4)](+) or [M+H](+) was useful to distinguish between the isomers of monosaccharides.     

Excited-state dynamics of trans,trans-distyrylbenzene: transient anisotropy and excitation energy dependence

We report a study of excited-state dynamics of trans,trans-distyrylbenzene in hexane solution with femtosecond two-color transient absorption spectroscopy. A consistent model of two distinct excited states, S1 and X, connected by the 10 ps dynamics is proposed with the support from the analysis of excited-state anisotropy. An investigation on the 10 ps dynamics with varying excitation energy has been also conducted. In the assumption of fast intramolecular vibrational redistribution, a dependence of this nonradiative 10 ps process on intramolecular temperature in the S1 state has been analyzed. We have found that an effective mode of approximately 1270 cm-1 is responsible for the 10 ps dynamics. The analysis of both anisotropy and pump-dependent results further implies that a distribution of rotamers may exist in the X state. The result indicates a drastic different excited-state relaxation pathway than that of trans-stilbene.     

Theory of time-resolved sum-frequency generation and its applications to vibrational dynamics of water

A molecular theory of time-resolved sum-frequency generation (SFG) has been developed. The theoretical framework is constructed using the coupled-oscillator model in the adiabatic approximation. This theory can treat not only the vibrational spectroscopy but also vibrational dynamics. An application of this theory is also provided for estimation of the time constants of the intermolecular vibrational energy transfer between water molecules. This approach can be used for molecular analysis of the experimental results of Shen at al. on the SFG studies of vibrational dynamics of water.     

Effects of the degree of surface modification on the rheological responses of precipitated silica suspensions in benzyl alcohol

Two types of precipitated silica powders modified by poly (dimethylsiloxane) (PDMS) were suspended in benzyl alcohol and their rheological properties were investigated as a function of silica volume fraction, φ. The suspensions were classified into sol, pre-gel, and gel states based on the increase in φ. An increase in the degree of surface modification by PDMS caused gelation at higher φ. Plots of apparent shear viscosity against shear rate in the sol and pre-gel states of highly modified silica suspensions showed weak shear thickening behavior, while the same plots for silica suspensions with a low modification level exhibited shear thinning behavior. The dynamic moduli of hydrophobic suspensions in the pre-gel and gel states were dependent on the surface modification: the storage modulus G′ was larger than the loss modulus G″ in the linear region and these moduli increased with increasing φ, irrespective of the silica powder. The linear region of the φ range for the precipitated silica suspensions was wider than that for the fumed silica powders modified by PDMS suspended in benzyl alcohol, while the G′ value in the linear region for the precipitated silica suspensions was less than those for the fumed silica suspensions.     

Recent topics on catalytic asymmetric 1,4-addition

Catalytic asymmetric 1,4-addition (conjugate addition; Michael addition) is one of the most powerful methods for carbon-carbon bond formation. Following the first efficient catalyst system developed by Feringa, which is composed of Cu(OTf)₂ and phosphoramidite with dialkylzincs, a variety of chiral catalysts have been reported for the catalytic asymmetric conjugate addition. In this digest review, we will first summarize novel chiral ligands that work efficiently for cyclic and acyclic enones and demonstrate the wide applicability of Michael acceptors. We will also introduce unique phenomena that include the nonlinear effect and reversal of enantioselectivity. Organomagnesium reagents have also been used instead of organozincs. Finally, we introduce the recent examples of the synthesis of natural products based on the catalytic asymmetric reaction. The rare experimental studies into the mechanism of copper-catalyzed 1,4-addition reported by Kitamura and Noyori’s group are also introduced.     

From propargylic biscarbonate to diaryl[n]dendralenes

An efficient cross-coupling reaction using a low cost carbon-supported palladium (Pd/C) catalyst for the synthesis of cross-conjugated compounds, diaryl[n]dendralenes, has been developed. The reaction of a propargylic biscarbonate with phenylboronic acid using Pd/C and phosphine ligand (S-Phos) gave 2,3-diphenyl[2]dendralene in high yield. We found that Pd/C was an effective catalyst for the synthesis of dialyl[n]dendralenes. The synthesis of various dendralenes was successfully achieved under the optimized conditions, giving dialyl [2] and [4] dendralenes in good yields.     

Binary amorphous solids consisting of 2,4,6-triarylphenoxyl radicals and their dimers

Although molecular amorphous materials represent an important area of research in solid-state chemistry, studies pertaining to these systems have been restricted almost exclusively to amorphous solids based on a single molecule. In this study, we found that, while the 2,4,6-bis(4-tert-butylphenyl)phenoxyl radical (2_M) and its dimer (2_D) did not give single-component amorphous solids, they rapidly formed the corresponding binary amorphous solid IIa following their condensation from benzene, dichloromethane, chloroform, and ethyl acetate solutions. The formation of IIa could be attributed to the good solubilities of 2_M and 2_D in these solvents and the high packing efficiencies of these amorphous solids. IIa was also obtained when crystals of 2_D (IIb) were ground together. The solid-state formation of IIa would not only involve the locational exchange of 2_M and 2_D, but would also involve chemical exchanges.